AT2G37840.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Protein kinase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Serine/threonine-protein kinase domain (InterPro:IPR002290), Serine/threonine-protein kinase, putative (InterPro:IPR020655), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Serine/threonine-protein kinase, active site (InterPro:IPR008271), Protein kinase-like domain (InterPro:IPR011009), Protein kinase, catalytic domain (InterPro:IPR000719), Tyrosine-protein kinase, catalytic domain (InterPro:IPR020635), Calcium/calmodulin-dependent protein kinase-like (InterPro:IPR020636); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT3G53930.2); Has 132594 Blast hits to 129738 proteins in 4259 species: Archae - 150; Bacteria - 15212; Metazoa - 48728; Fungi - 13428; Plants - 32505; Viruses - 540; Other Eukaryotes - 22031 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:15851978..15856047 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81819.20 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.83 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 733 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAQFTGRVVG DYLVGRQIGS GSFSVVWEAR HRVDGTEVAI KEIAMDRLNK KLQESLMSEI FILRRINHPN IIRLIDMIKS PGKVHLVLEY CKGGDLSVYV 101: QRHGIVPEAT AKHFMQQLAA GLQVLRDNNI IHRDLKPQNL LLSTNENDAD LKIADFGFAR SLQPRGLAET LCGSPLYMAP EIMQLQKYDA KADLWSVGAI 201: LFQLVTGRTP FTGNSQIQLL QNIIRSTELH FPGDCRDLSL DCIDLCQKLL RRNPVERLTF EEFFNHPFLS DRQSYDFSRS RLGLRTMDGF LSSGSSPSRN 301: MEESSQEDCL PFLLDDDSSG PEGSPSYLKK TSSMKSSSGI KVDTRIERKE VESSPLKHTE LTSGYSSFNQ KVENDRFRFE TQINSDRRNR REPTGLTDSR 401: SLIAPGRVDD SQDSMDQDFV LVSGPPVDMP SSSSSSSKPY NFPFKSQSPP VELFNRSISS TAPMPIIGAT SNSIGQFGSL DSQYSAPSTS HGSLDLGDAF 501: EQPSTHSLTR IRSLRKYAAT IAELVYERIE SDKHLEAFSI QLAILAIWKQ ALHICHTQAI SGLEGSPSQD INKLRSSSLK HDTHSSNKVT DLSHDGSEEI 601: SSQIQRQFIQ EIELAEELAK SIEPGNTKMP DAMETIFEAA LDLGKLGGVK EVMGDTENAG NQYSKAVRLL VFLLVEAPML ILNPPLSLTN SVRYRLRTYI 701: DFLSRRLKHL QSHRRSSAGQ MQGSSLAMMN RQS |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)