suba logo
AT2G37780.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Cysteine/Histidine-rich C1 domain family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G37820.1); Has 2672 Blast hits to 1981 proteins in 235 species: Archae - 0; Bacteria - 73; Metazoa - 736; Fungi - 340; Plants - 1267; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JAN9eggNOG:ENOG41118GVEMBL:CP002685EnsemblPlants:AT2G37780
EnsemblPlants:AT2G37780.1entrez:818355GeneID:818355GO:GO:0047134
Gramene:AT2G37780.1hmmpanther:PTHR13871hmmpanther:PTHR13871:SF39InParanoid:F4IR19
InterPro:IPR004146KEGG:ath:AT2G37780OMA:CDYDLHEPaxDb:F4IR19
Pfam:PF03107Pfam:PF07649ProteinModelPortal:F4IR19Proteomes:UP000006548
RefSeq:NP_181314.1SMR:F4IR19SUPFAM:SSF57889TAIR:AT2G37780
UniGene:At.66331UniProt:F4IR19
Coordinates (TAIR10) chr2:-:15837442..15838302
Molecular Weight (calculated) 31523.70 Da
IEP (calculated) 7.35
GRAVY (calculated) -0.85
Length 286 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIPQTIQHF THNHLLTQVN GIGTYTCDGC KLYGEGRTYR CSDCDYDLHE YCATCPSILL NSCHGPDHEL SLFNGHMTER SCYVCRVSIQ GMFYKCRQCS
101: FEAHPLCTYA PMHASSPDLL VTKQRSLHGH AGQPSPPHQY GQGIPYGYPH MGQPEPYPPQ GGGYQPQNQN YYPYMNSGSP KTESIGHPET YPPQGGGHQH
201: QHQHQNHQPG PYTPQGDGHQ HQQQNHHPYM NSGSPKSESS AVSTTTKTKK KKPGFFGAMK AAATATVTIA AQVAVAAMTD GETTYE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)