AT2G37780.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Cysteine/Histidine-rich C1 domain family protein | ||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Cysteine/Histidine-rich C1 domain family protein; CONTAINS InterPro DOMAIN/s: C1-like (InterPro:IPR011424); BEST Arabidopsis thaliana protein match is: Cysteine/Histidine-rich C1 domain family protein (TAIR:AT2G37820.1); Has 2672 Blast hits to 1981 proteins in 235 species: Archae - 0; Bacteria - 73; Metazoa - 736; Fungi - 340; Plants - 1267; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink). | ||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:15837442..15838302 | ||||||||||||||||||||||||||||
Molecular Weight (calculated) | 31523.70 Da | ||||||||||||||||||||||||||||
IEP (calculated) | 7.35 | ||||||||||||||||||||||||||||
GRAVY (calculated) | -0.85 | ||||||||||||||||||||||||||||
Length | 286 amino acids | ||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MSIPQTIQHF THNHLLTQVN GIGTYTCDGC KLYGEGRTYR CSDCDYDLHE YCATCPSILL NSCHGPDHEL SLFNGHMTER SCYVCRVSIQ GMFYKCRQCS 101: FEAHPLCTYA PMHASSPDLL VTKQRSLHGH AGQPSPPHQY GQGIPYGYPH MGQPEPYPPQ GGGYQPQNQN YYPYMNSGSP KTESIGHPET YPPQGGGHQH 201: QHQHQNHQPG PYTPQGDGHQ HQQQNHHPYM NSGSPKSESS AVSTTTKTKK KKPGFFGAMK AAATATVTIA AQVAVAAMTD GETTYE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)