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AT2G37670.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G02430.1); Has 38438 Blast hits to 23319 proteins in 700 species: Archae - 52; Bacteria - 5411; Metazoa - 15006; Fungi - 8500; Plants - 4706; Viruses - 3; Other Eukaryotes - 4760 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQPJeggNOG:KOG0283EMBL:AC004684EMBL:CP002685EnsemblPlants:AT2G37670EnsemblPlants:AT2G37670.1entrez:818344
Gene3D:2.130.10.10GeneID:818344Gramene:AT2G37670.1hmmpanther:PTHR14221hmmpanther:PTHR14221:SF7HOGENOM:HOG000239143InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR019775InterPro:IPR020472KEGG:ath:AT2G37670OMA:INTRSHEPfam:PF00400
Pfscan:PS50082Pfscan:PS50294PhylomeDB:O80935PIR:T02533PRINTS:PR00320PROSITE:PS00678PROSITE:PS50082
PROSITE:PS50294Proteomes:UP000006548RefSeq:NP_181303.1scanprosite:PS00678SMART:SM00320SMR:O80935STRING:3702.AT2G37670.1
SUPFAM:SSF50978TAIR:AT2G37670UniGene:At.50121UniProt:O80935
Coordinates (TAIR10) chr2:-:15797384..15800536
Molecular Weight (calculated) 101349.00 Da
IEP (calculated) 8.55
GRAVY (calculated) -0.66
Length 903 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDGNKLDRK KTMTMNWEGL GDFEDEDDDR FFETHDRLSS ALTFDMANAS SSDEDEDFDD CRLSFSSAVS SLTTASRKFR TPAMSPDYDI WMAAPGSISE
101: RRRRLLHGMG LASNKDMVSA VSIRRVVSNA PVVSNGEEKK MKKKMNHEVD EQDHDHVPVM LARSRSESDI ERFLIEKRRK EEILGKISKQ RLTRTYSTIC
201: PTRTRICQYQ TPIRQTPAVC GNGKALRGGG EALTSVMSNA RVGAFFLIKN LDTGKEFIVN EYDEDGMWNR LSDLQTGKQL TLEEFEKCVG YSPVVKELMR
301: RENVNRINYE PLMDLRKFNS YLSKSVRLSK RRGAALLKNI KGVAHSMSLR VADKDVSDGS TDSPKKGKDH KHGKANEWVK VRPTGKSYKE LSALHMCQEI
401: QAHEGAVWTI KFSQDAHYLA SGGADRVIHV WEVQECELMS MNEGSLTPIH PSLCDSSGNE ITVVEKKKKG KGSSGRRHNH IPDYVHVPET VFSFSDKPVC
501: SLKGHLDAIL DLSWSKSQLL LSSSMDKTVR LWDIETKTCL KLFAHNDYVT CIQFSPVDEN YFLSGSLDAK IRIWSIQDRH VVEWSDLHEM VTAACYTPDG
601: QGALIGSHKG ICRAYDTEDC KLSQTNQIDV QSNKKSQAKR KITSFQFSPV NPSEVLVTSA DSRIRILDGS EVIHKFKGFR NTCSQLSASY SQDGKYIICA
701: SEDSQVYLWK NDFHRTRSTL TTQSHEHFHC KDVSAAVPWH GHVRGEPPPV QIHSKRHSKR ISTSSQPSST ISSPTKEETS ATGPTTSNRN KKSGLPPMPK
801: KAATKSQIQP EEEAGPELGS SESFRSSMNS SEQHSSRFGE SPSINTSSRL SSWSWFDSGG HGPQTIQPTA WGMVIVTATV HGEIRSYQNF GLPRRIGRQT
901: TLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)