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AT2G37640.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:30783145 (2019): extracellular region apoplast
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:21109274 (2011): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Barwin-like endoglucanases superfamily protein
Curator
Summary (TAIR10)
member of Alpha-Expansin Gene Family. Naming convention from the Expansin Working Group (Kende et al, 2004. Plant Mol Bio). Involved in the formation of nematode-induced syncytia in roots of Arabidopsis thaliana.
Computational
Description (TAIR10)
EXP3; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Barwin-related endoglucanase (InterPro:IPR009009), Pollen allergen, N-terminal (InterPro:IPR014734), Expansin (InterPro:IPR002963), Rare lipoprotein A (InterPro:IPR005132), Expansin/Lol pI (InterPro:IPR007118), Expansin 45, endoglucanase-like (InterPro:IPR007112), Pollen allergen/expansin, C-terminal (InterPro:IPR007117); BEST Arabidopsis thaliana protein match is: expansin A4 (TAIR:AT2G39700.1); Has 2147 Blast hits to 2144 proteins in 153 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 34; Plants - 2079; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II8QeggNOG:ENOG410YC36EMBL:AC004684EMBL:AY090368
EMBL:AY122898EMBL:CP002685EnsemblPlants:AT2G37640EnsemblPlants:AT2G37640.1
entrez:818341Gene3D:2.40.40.10Gene3D:2.60.40.760GeneID:818341
Genevisible:O80932GO:GO:0005576GO:GO:0005618GO:GO:0006949
GO:GO:0009664GO:GO:0009739GO:GO:0010114GO:GO:0016020
Gramene:AT2G37640.1hmmpanther:PTHR31867hmmpanther:PTHR31867:SF29HOGENOM:HOG000220793
InParanoid:O80932InterPro:IPR002963InterPro:IPR007112InterPro:IPR007117
InterPro:IPR007118InterPro:IPR009009KEGG:ath:AT2G37640OMA:SGGPWQN
PaxDb:O80932Pfam:O80932Pfam:PF01357Pfam:PF03330
Pfscan:PS50842Pfscan:PS50843PhylomeDB:O80932PIR:T02530
PRIDE:O80932PRINTS:PR01225PRINTS:PR01226PRO:PR:O80932
PROSITE:PS50842PROSITE:PS50843ProteinModelPortal:O80932Proteomes:UP000006548
RefSeq:NP_181300.1SMART:SM00837SMR:O80932STRING:3702.AT2G37640.1
SUPFAM:SSF49590SUPFAM:SSF50685TAIR:AT2G37640tair10-symbols:ATEXP3
tair10-symbols:ATEXPA3tair10-symbols:ATHEXP ALPHA 1.9tair10-symbols:EXP3UniGene:At.12794
UniGene:At.67046UniProt:O80932
Coordinates (TAIR10) chr2:-:15788077..15789812
Molecular Weight (calculated) 28267.50 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.06
Length 262 amino acids
Sequence (TAIR10)
(BLAST)
001: MTATAFRVGL WLAVTASFLL TATNAKIPGV YSGGPWQNAH ATFYGGSDAS GTMGGACGYG NLYSQGYGVN TAALSTALFN NGFSCGACFE IKCTDDPRWC
101: VPGNPSILVT ATNFCPPNFA QPSDDGGWCN PPREHFDLAM PMFLKIGLYR AGIVPVSYRR VPCRKIGGIR FTVNGFRYFN LVLVTNVAGA GDINGVSVKG
201: SKTDWVRMSR NWGQNWQSNA VLIGQSLSFR VTASDRRSST SWNVAPATWQ FGQTFSGKNF RV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)