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AT2G37620.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:24012629 (2013): nucleus
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : actin 1
Curator
Summary (TAIR10)
Member of the actin gene family. Expressed in mature pollen.
Computational
Description (TAIR10)
actin 1 (ACT1); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: cytoskeleton organization, root hair elongation, developmental growth; LOCATED IN: cell wall, cytoskeleton, plasma membrane; EXPRESSED IN: ovule, vascular bundle, male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Actin, conserved site (InterPro:IPR004001), Actin/actin-like (InterPro:IPR004000), Actin/actin-like conserved site (InterPro:IPR020902); BEST Arabidopsis thaliana protein match is: actin 3 (TAIR:AT3G53750.1); Has 15230 Blast hits to 14806 proteins in 3046 species: Archae - 8; Bacteria - 15; Metazoa - 5741; Fungi - 5229; Plants - 1611; Viruses - 2; Other Eukaryotes - 2624 (source: NCBI BLink).
Protein Annotations
BioGrid:3683BioGrid:9859eggNOG:COG5277eggNOG:KOG0676
EMBL:AL132960EMBL:AY049293EMBL:AY086557EMBL:BT002257
EMBL:CP002686EMBL:U39480EnsemblPlants:AT2G37620EnsemblPlants:AT2G37620.1
EnsemblPlants:AT2G37620.2EnsemblPlants:AT3G53750.1entrez:818339entrez:824542
ExpressionAtlas:P0CJ47GeneID:818339GeneID:824542Genevisible:P0CJ47
GO:GO:0005200GO:GO:0005524GO:GO:0005618GO:GO:0005634
GO:GO:0005737GO:GO:0005856GO:GO:0009506GO:GO:0048046
Gramene:AT2G37620.1Gramene:AT2G37620.2Gramene:AT3G53750.1hmmpanther:PTHR11937
hmmpanther:PTHR11937:SF236InParanoid:P0CJ47IntAct:P0CJ47InterPro:IPR004000
InterPro:IPR004001InterPro:IPR020902KEGG:ath:AT2G37620KEGG:ath:AT3G53750
KO:K10355PANTHER:PTHR11937PaxDb:P0CJ47Pfam:P0CJ46
Pfam:P0CJ47Pfam:PF00022PhylomeDB:P0CJ47PIR:S68112
PRIDE:P0CJ47PRINTS:PR00190PRO:PR:P0CJ47PROSITE:PS00406
PROSITE:PS00432PROSITE:PS01132ProteinModelPortal:P0CJ47Proteomes:UP000006548
RefSeq:NP_001031504.1RefSeq:NP_566988.1RefSeq:NP_850284.1scanprosite:PS00406
scanprosite:PS00432scanprosite:PS01132SMART:SM00268SMR:P0CJ47
STRING:3702.AT3G53750.1SUPFAM:SSF53067TAIR:AT3G53750tair10-symbols:AAc1
tair10-symbols:ACT1UniGene:At.11577UniGene:At.23346UniGene:At.23663
UniGene:At.23817UniProt:F1LIM1UniProt:P0CJ46UniProt:P0CJ47
Coordinates (TAIR10) chr2:+:15779761..15781241
Molecular Weight (calculated) 41800.20 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.20
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MADGEDIQPL VCDNGTGMVK AGFAGDDAPR AVFPSIVGRP RHTGVMVGMG QKDAYVGDEA QSKRGILTLK YPIEHGIVNN WDDMEKIWHH TFYNELRVAP
101: EEHPILLTEA PLNPKANREK MTQIMFETFN APAMYVAIQA VLSLYASGRT TGIVLDSGDG VSHTVPIYEG YALPHAILRL DLAGRDLTDA LMKILTERGY
201: SFTTTAEREI VRDIKEKLCY IALDYEQELE TAKTSSSVEK NYELPDGQVI TIGSERFRCP EVLYQPSMIG MENAGIHETT YNSIMKCDVD IRKDLYGNIV
301: LSGGTTMFPG IADRMSKEIT ALAPSSMKIK VVAPPERKYS VWIGGSILAS LSTFQQMWIA KAEYDESGPS IVHRKCF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)