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AT2G37600.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:30135097 (2018): plastid
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L36e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L36e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L36e (InterPro:IPR000509); BEST Arabidopsis thaliana protein match is: Ribosomal protein L36e family protein (TAIR:AT3G53740.4); Has 755 Blast hits to 754 proteins in 262 species: Archae - 0; Bacteria - 0; Metazoa - 355; Fungi - 139; Plants - 140; Viruses - 0; Other Eukaryotes - 121 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5051eggNOG:KOG3452EMBL:AC004684EMBL:AY052221
EMBL:AY060496EMBL:AY086261EMBL:CP002685EnsemblPlants:AT2G37600
EnsemblPlants:AT2G37600.1EnsemblPlants:AT2G37600.2entrez:818337GeneID:818337
Genevisible:O80929GO:GO:0003735GO:GO:0006412GO:GO:0022625
Gramene:AT2G37600.1Gramene:AT2G37600.2hmmpanther:PTHR10114HOGENOM:HOG000155312
InParanoid:O80929InterPro:IPR000509KEGG:ath:AT2G37600KO:K02920
OMA:GMAPYEKPANTHER:PTHR10114PaxDb:O80929Pfam:O80929
Pfam:PF01158PhylomeDB:O80929PIR:T02526PRIDE:O80929
PRO:PR:O80929PROSITE:PS01190ProteinModelPortal:O80929Proteomes:UP000006548
Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_001078017.1RefSeq:NP_181296.1
scanprosite:PS01190SMR:O80929STRING:3702.AT2G37600.1TAIR:AT2G37600
UniGene:At.26434UniProt:O80929
Coordinates (TAIR10) chr2:-:15774410..15775203
Molecular Weight (calculated) 12737.20 Da
IEP (calculated) 12.28
GRAVY (calculated) -0.70
Length 113 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTPAVKTGL FVGLNKGHVV TRRELAPRPN SRKGKTSKRT IFIRKLIREV AGMAPYEKRI TELLKVGKDK RALKVAKRKL GTHKRAKRKR EEMSSVLRKM
101: RSLGGAAAAE KKM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)