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AT2G37550.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23266962 (2013): Golgi Golgi apparatus
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:18433157 (2008): cytosol
  • PMID:18433157 (2008): nucleus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ARF-GAP domain 7
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational
Description (TAIR10)
ARF-GAP domain 7 (AGD7); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 6 (TAIR:AT3G53710.2); Has 3753 Blast hits to 3670 proteins in 253 species: Archae - 0; Bacteria - 30; Metazoa - 1888; Fungi - 664; Plants - 561; Viruses - 0; Other Eukaryotes - 610 (source: NCBI BLink).
Protein Annotations
BioGrid:3675eggNOG:COG5347eggNOG:KOG0704EMBL:AB017876EMBL:AC004684EMBL:AF436828EMBL:AY034983
EMBL:AY063077EMBL:AY103310EMBL:CP002685EnsemblPlants:AT2G37550EnsemblPlants:AT2G37550.1EnsemblPlants:AT2G37550.2entrez:818331
GeneID:818331Genevisible:O80925GO:GO:0005096GO:GO:0005634GO:GO:0005794GO:GO:0005829GO:GO:0016192
GO:GO:0046872Gramene:AT2G37550.1Gramene:AT2G37550.2hmmpanther:PTHR23180hmmpanther:PTHR23180:SF293HOGENOM:HOG000239963InParanoid:O80925
InterPro:IPR001164iPTMnet:O80925KEGG:ath:AT2G37550KO:K12492OMA:EEASTWNPaxDb:O80925Pfam:O80925
Pfam:PF01412Pfscan:PS50115PhylomeDB:O80925PIR:T02521PRIDE:O80925PRINTS:PR00405PRO:PR:O80925
PROSITE:PS50115ProteinModelPortal:O80925Proteomes:UP000006548Reactome:R-ATH-199997RefSeq:NP_001031503.1RefSeq:NP_181291.1SMART:SM00105
SMR:O80925STRING:3702.AT2G37550.1SUPFAM:SSF57863TAIR:AT2G37550tair10-symbols:AGD7tair10-symbols:ASP1UniGene:At.25553
UniGene:At.75563UniProt:O80925
Coordinates (TAIR10) chr2:-:15755544..15757456
Molecular Weight (calculated) 49254.20 Da
IEP (calculated) 6.20
GRAVY (calculated) -0.87
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAARRLRTL QSQPENKVCV DCSQKNPQWA SISYGIFMCL ECSGKHRGLG VHISFVRSVT MDSWSEIQIK KMDAGGNERL NNFLAQYGIS KETDIISKYN
101: SNAASVYRDR IQALAEGRQW RDPPIVKESV GGGLMNKKPP LSQGGGRDSG NGGWDNWDND DSFRSTDMRR NQSAGDFRSS GGRGAPAKSK SSEDIYSRSQ
201: LEASAANKES FFAKRMAENE SKPEGLPPSQ GGKYVGFGSS PGPAPRSNQQ SGGGDVFSVM SEGFGRLSLV AASAANVVQT GTMEFTSKVK EGGLDQTVSE
301: TVNVVASKTT EIGQRTWGIM KGVMAIASQK VEEFTKEEAS TWNQQNKTEG NGYYQNSGIG NKTANSSFGG SQSSSSGHNN SYRNSNSWDD WGEENNSKKE
401: AAPKVSTSND DDDGGWAGWD DNDAKDDDFY YQPASDKKSV GHNGKSDTAW TGGGFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)