suba logo
AT2G37340.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : arginine/serine-rich zinc knuckle-containing protein 33
Curator
Summary (TAIR10)
encodes an RS-containing Zinc knuckle protein with molecular mass of 33kDa that is localized to nuclear specks.
Computational
Description (TAIR10)
arginine/serine-rich zinc knuckle-containing protein 33 (RSZ33); FUNCTIONS IN: zinc ion binding, nucleotide binding, nucleic acid binding; INVOLVED IN: spliceosome assembly, nuclear mRNA splicing, via spliceosome, RNA splicing; LOCATED IN: nuclear speck; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), Zinc finger, CCHC-type (InterPro:IPR001878); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (TAIR:AT3G53500.2); Has 128112 Blast hits to 126672 proteins in 4377 species: Archae - 175; Bacteria - 14621; Metazoa - 47197; Fungi - 12494; Plants - 32367; Viruses - 521; Other Eukaryotes - 20737 (source: NCBI BLink).
Protein Annotations
BioGrid:3655eggNOG:ENOG4111N8YeggNOG:KOG0107EMBL:AC005896EMBL:AJ293801EMBL:AK176551EMBL:AK176666
EMBL:AY072315EMBL:AY114563EMBL:BX842463EMBL:BX842467EMBL:CP002685EnsemblPlants:AT2G37340EnsemblPlants:AT2G37340.1
entrez:818311ExpressionAtlas:Q8VYA5Gene3D:3.30.70.330Gene3D:4.10.60.10GeneID:818311Genevisible:Q8VYA5GO:GO:0000166
GO:GO:0000245GO:GO:0000398GO:GO:0003676GO:GO:0005681GO:GO:0008270GO:GO:0008380GO:GO:0016607
hmmpanther:PTHR23147HOGENOM:HOG000276234InParanoid:Q8VYA5IntAct:Q8VYA5InterPro:IPR000504InterPro:IPR001878InterPro:IPR012677
iPTMnet:Q8VYA5KEGG:ath:AT2G37340KO:K12896OMA:DYEPNRTPaxDb:Q8VYA5Pfam:PF00076Pfam:PF00098
Pfam:Q8VYA5Pfscan:PS50102Pfscan:PS50158PhylomeDB:Q8VYA5PIR:F84791PRIDE:Q8VYA5PRO:PR:Q8VYA5
PROSITE:PS50102PROSITE:PS50158ProteinModelPortal:Q8VYA5Proteomes:UP000006548Reactome:R-ATH-72163Reactome:R-ATH-72165Reactome:R-ATH-72187
RefSeq:NP_850280.1RefSeq:NP_973619.1RefSeq:NP_973620.1SMART:SM00343SMART:SM00360SMR:Q8VYA5STRING:3702.AT2G37340.1
SUPFAM:SSF54928SUPFAM:SSF57756TAIR:AT2G37340tair10-symbols:AT-RS2Z33tair10-symbols:ATRSZ33tair10-symbols:RS2Z33tair10-symbols:RSZ33
UniGene:At.48558UniGene:At.71153UniProt:Q8VYA5
Coordinates (TAIR10) chr2:-:15670372..15672331
Molecular Weight (calculated) 32894.80 Da
IEP (calculated) 10.64
GRAVY (calculated) -1.42
Length 290 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRYDDRYGN TRLYVGRLSS RTRTRDLERL FSRYGRVRDV DMKRDYAFVE FGDPRDADDA RHYLDGRDFD GSRITVEFSR GAPRGSRDFD SRGPPPGAGR
101: CFNCGVDGHW ARDCTAGDWK NKCYRCGERG HIERNCKNSP KKLRRSGSYS RSPVRSRSPR RRRSPSRSLS RSRSYSRSRS PVRRRERSVE ERSRSPKRMD
201: DSLSPRARDR SPVLDDEGSP KIIDGSPPPS PKLQKEVGSD RDGGSPQDNG RNSVVSPVVG AGGDSSKEDR SPVDDDYEPN RTSPRGSESP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)