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AT2G37310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 41005 Blast hits to 14175 proteins in 268 species: Archae - 2; Bacteria - 17; Metazoa - 83; Fungi - 122; Plants - 40263; Viruses - 0; Other Eukaryotes - 518 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC005896EMBL:AK230376
EMBL:CP002685EnsemblPlants:AT2G37310EnsemblPlants:AT2G37310.1entrez:818308
Gene3D:1.25.40.10GeneID:818308Genevisible:Q9ZUT5Gramene:AT2G37310.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF38HOGENOM:HOG000090695InParanoid:Q9ZUT5
InterPro:IPR002885InterPro:IPR011990KEGG:ath:AT2G37310OMA:TIMANLY
PaxDb:Q9ZUT5Pfam:PF01535Pfam:PF13041Pfam:Q9ZUT5
Pfscan:PS51375PhylomeDB:Q9ZUT5PIR:B84791PRIDE:Q9ZUT5
PRO:PR:Q9ZUT5PROSITE:PS51375ProteinModelPortal:Q9ZUT5Proteomes:UP000006548
RefSeq:NP_181268.1SMR:Q9ZUT5STRING:3702.AT2G37310.1SUPFAM:SSF48452
TAIR:AT2G37310TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.51341
UniProt:Q9ZUT5
Coordinates (TAIR10) chr2:-:15665102..15667075
Molecular Weight (calculated) 73346.90 Da
IEP (calculated) 5.85
GRAVY (calculated) -0.06
Length 657 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLGFEIQRA LQGLLNKAAV DGGAYGHLIQ HFTRHRLPLH VLQLHARIVV FSIKPDNFLA SKLISFYTRQ DRFRQALHVF DEITVRNAFS YNALLIAYTS
101: REMYFDAFSL FLSWIGSSCY SSDAARPDSI SISCVLKALS GCDDFWLGSL ARQVHGFVIR GGFDSDVFVG NGMITYYTKC DNIESARKVF DEMSERDVVS
201: WNSMISGYSQ SGSFEDCKKM YKAMLACSDF KPNGVTVISV FQACGQSSDL IFGLEVHKKM IENHIQMDLS LCNAVIGFYA KCGSLDYARA LFDEMSEKDS
301: VTYGAIISGY MAHGLVKEAM ALFSEMESIG LSTWNAMISG LMQNNHHEEV INSFREMIRC GSRPNTVTLS SLLPSLTYSS NLKGGKEIHA FAIRNGADNN
401: IYVTTSIIDN YAKLGFLLGA QRVFDNCKDR SLIAWTAIIT AYAVHGDSDS ACSLFDQMQC LGTKPDDVTL TAVLSAFAHS GDSDMAQHIF DSMLTKYDIE
501: PGVEHYACMV SVLSRAGKLS DAMEFISKMP IDPIAKVWGA LLNGASVLGD LEIARFACDR LFEMEPENTG NYTIMANLYT QAGRWEEAEM VRNKMKRIGL
601: KKIPGTSWIE TEKGLRSFIA KDSSCERSKE MYEIIEGLVE SMSDKEYIRK QELDEAY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)