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AT2G37210.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : lysine decarboxylase family protein
Curator
Summary (TAIR10)
Encodes a protein of unknown function. It has been crystallized and shown to be structurally almost identical to the protein encoded by At5g11950.
Computational
Description (TAIR10)
lysine decarboxylase family protein; CONTAINS InterPro DOMAIN/s: Conserved hypothetical protein CHP00730 (InterPro:IPR005269); BEST Arabidopsis thaliana protein match is: Putative lysine decarboxylase family protein (TAIR:AT3G53450.1); Has 5502 Blast hits to 5500 proteins in 1566 species: Archae - 27; Bacteria - 3836; Metazoa - 10; Fungi - 132; Plants - 402; Viruses - 0; Other Eukaryotes - 1095 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-649-MONOMERBioGrid:3642DNASU:818298EC:3.2.2.n1
EMBL:AC006260EMBL:AY102554EMBL:AY954818EMBL:CP002685
EnsemblPlants:AT2G37210EnsemblPlants:AT2G37210.1entrez:818298EvolutionaryTrace:Q8L8B8
ExpressionAtlas:Q8L8B8GeneID:818298Genevisible:Q8L8B8GO:GO:0005634
GO:GO:0005737GO:GO:0009691GO:GO:0016799hmmpanther:PTHR31223
hmmpanther:PTHR31223:SF17HOGENOM:HOG000156894InterPro:IPR005269InterPro:IPR031100
PDB:2A33PDB:2Q4OPDBsum:2A33PDBsum:2Q4O
Pfam:PF03641Pfam:Q8L8B8PhylomeDB:Q8L8B8PIR:H84789
PRIDE:Q8L8B8PRO:PR:Q8L8B8ProteinModelPortal:Q8L8B8Proteomes:UP000006548
RefSeq:NP_181258.2SMR:Q8L8B8SUPFAM:SSF102405TAIR:AT2G37210
TIGRfam:TIGR00730TIGRFAMs:TIGR00730UniGene:At.37455UniProt:Q8L8B8
Coordinates (TAIR10) chr2:-:15624253..15626834
Molecular Weight (calculated) 23559.40 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.14
Length 215 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIKGESMQK SKFRRICVFC GSSQGKKSSY QDAAVDLGNE LVSRNIDLVY GGGSIGLMGL VSQAVHDGGR HVIGIIPKTL MPRELTGETV GEVRAVADMH
101: QRKAEMAKHS DAFIALPGGY GTLEELLEVI TWAQLGIHDK PVGLLNVDGY YNSLLSFIDK AVEEGFISPT AREIIVSAPT AKELVKKLEE YAPCHERVAT
201: KLCWEMERIG YSSEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)