suba logo
AT2G37160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.990
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G53390.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:CP002685EnsemblPlants:AT2G37160EnsemblPlants:AT2G37160.1entrez:818292
ExpressionAtlas:F4IQ11Gene3D:2.130.10.10GeneID:818292Gramene:AT2G37160.1
hmmpanther:PTHR14107InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
Pfam:PF00400Pfscan:PS50082Pfscan:PS50294PRIDE:F4IQ11
PROSITE:PS50082PROSITE:PS50294ProteinModelPortal:F4IQ11Proteomes:UP000006548
RefSeq:NP_181253.2SMART:SM00320SMR:F4IQ11SUPFAM:SSF50978
TAIR:AT2G37160UniGene:At.37461UniGene:At.67822UniProt:F4IQ11
Coordinates (TAIR10) chr2:+:15609047..15612529
Molecular Weight (calculated) 57951.40 Da
IEP (calculated) 7.89
GRAVY (calculated) -0.40
Length 544 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNTSNGMIS GPSSSSASAA NPQSPGIKTY FKTPEGKYKL HYEKTHPSGL LHYTHGKTVT QVTLAHLKDK PAPSTPTGTS SSSTASSGFR SATARLLGGG
101: NGNRALSFVG GNGGAKNVGA SSRIGASFAA SSSNTSATNT NFDGKGTYLV FNVGDAIFIS DLNSQDKDPV KSIHISNSNP MCHAFHPDAK DGHDLLIGLN
201: SGDVYTVSLR QQLQDVGKKL VSAQHYNKDG SVNNSRCTSI AWVPGGDGSF VAAHADGNLY VYEKNKEGAT DSSFSAIRDP TQFSVDKAKY SKSNPVARWH
301: IGQGAINSIA FSNDGAYLAT VGRDGYLRIF DFSTQKLVCG VKSYYGALLC CAWSMDGKYL LTGGEDDLVQ VWSMEDRKVV AWGEGHNSWV SGVAFDSYWS
401: SPNSEGSGEN VMYRFGSVGQ DTQLLLWDLE MDEIVVPLRR PPGGSPTYST GSQSAHWDNI VPMGTLQPAP CMRDVPKLSP VVAHRVHTEP LSGLIFTQES
501: LITACREGHL KIWTRPDTQP SSSSEATNPT TSKPSLTSKV GGSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)