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AT2G37120.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S1FA-like DNA-binding protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
S1FA-like DNA-binding protein; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription; LOCATED IN: endomembrane system, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA binding protein S1FA (InterPro:IPR006779); BEST Arabidopsis thaliana protein match is: S1FA-like DNA-binding protein (TAIR:AT3G53370.1); Has 76 Blast hits to 76 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J6SNeggNOG:ENOG410ZCDZEMBL:AC006260EMBL:AF372892EMBL:AY085439EMBL:BT002669EMBL:CP002685
EMBL:F19912EnsemblPlants:AT2G37120EnsemblPlants:AT2G37120.1entrez:818288GeneID:818288Genevisible:Q42337GO:GO:0003677
GO:GO:0005634GO:GO:0006351GO:GO:0006355Gramene:AT2G37120.1hmmpanther:PTHR35298HOGENOM:HOG000240777InParanoid:Q42337
InterPro:IPR006779iPTMnet:Q42337KEGG:ath:AT2G37120OMA:YMYAQKNPaxDb:Q42337Pfam:PF04689Pfam:Q42337
PIR:G84788PRIDE:Q42337PRO:PR:Q42337Proteomes:UP000006548RefSeq:NP_565859.1STRING:3702.AT2G37120.1TAIR:AT2G37120
TMHMM:TMhelixUniGene:At.13687UniProt:Q42337
Coordinates (TAIR10) chr2:-:15594250..15594815
Molecular Weight (calculated) 8221.51 Da
IEP (calculated) 10.86
GRAVY (calculated) -0.02
Length 76 amino acids
Sequence (TAIR10)
(BLAST)
1: MSSDGSAGKA VVEAKGLNPG LIVLLVIGGL LVTFLIANYV MYMYAQKNLP PRKKKPLSKK KLKREKLKQG VPVPGE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)