AT2G37080.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : ROP interactive partner 3 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
ROP interactive partner 3 (RIP3); LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: ROP interactive partner 4 (TAIR:AT3G53350.1); Has 147635 Blast hits to 77239 proteins in 3391 species: Archae - 1987; Bacteria - 30902; Metazoa - 62424; Fungi - 12574; Plants - 8109; Viruses - 683; Other Eukaryotes - 30956 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:15581565..15584057 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65861.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.87 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.02 | ||||||||||||||||||||||||||||||||||||||||
| Length | 583 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQTPKPRPGS LEVPQKKSPA STPKTARKLK TSESDPVSSP NTKIRTPKTQ SPKVVADRRS PRTPVNEIQK KRTGKTPELA SQISQLQEEL KKAKEQLSAS 101: EALKKEAQDQ AEETKQQLME INASEDSRID ELRKLSQERD KAWQSELEAM QRQHAMDSAA LSSTMNEVQK LKAQLSESEN VENLRMELNE TLSLVEKLRG 201: ELFDAKEGEA QAHEIVSGTE KQLEIANLTL EMLRSDGMKM SEACNSLTTE LEQSKSEVRS LEQLVRQLEE EDEARGNANG DSSSVEELKE EINVARQEIS 301: QLKSAVEVTE RRYHEEYIQS TLQIRTAYEQ VDEVKSGYAQ REAELGEELK KTKAERDSLH ERLMDKEAKL RILVDENEIL NSKIKEKEEV YLNLENSLNQ 401: NEPEDTGELK KLESDVMELR ANLMDKEMEL QSVMSQYESL RSEMETMQSE KNKAIDEALA KLGSLTEEAD KSGKRAENAT EQLGAAQVTN TELEAELRRL 501: KVQCDQWRKA AEAAATMLSG GNNNNNSNGK YVERTGSLES PLRRRNVNMS PYMGETDDEL SSPKKKNGSM LKKIGVLLKK SQK |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)