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AT2G36990.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : RNApolymerase sigma-subunit F
Curator
Summary (TAIR10)
Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. It is a substrate for regulatory phosphorylation by cpCK2, a nuclear-coded plastid-targeted casein kinase 2, that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation.
Computational
Description (TAIR10)
RNApolymerase sigma-subunit F (SIGF); CONTAINS InterPro DOMAIN/s: RNA polymerase sigma factor, region 2 (InterPro:IPR013325), Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA polymerase sigma-70 region 3 (InterPro:IPR007624), RNA polymerase sigma-70 (InterPro:IPR014284), RNA polymerase sigma factor, region 3/4 (InterPro:IPR013324), RNA polymerase sigma factor, SigB/SigC/SigD, plastid (InterPro:IPR016262), RNA polymerase sigma-70 factor (InterPro:IPR000943), RNA polymerase sigma-70 region 2 (InterPro:IPR007627), RNA polymerase sigma-70 region 4 (InterPro:IPR007630); BEST Arabidopsis thaliana protein match is: RNApolymerase sigma subunit 2 (TAIR:AT1G08540.1); Has 23918 Blast hits to 23899 proteins in 2801 species: Archae - 0; Bacteria - 17084; Metazoa - 1; Fungi - 2; Plants - 241; Viruses - 15; Other Eukaryotes - 6575 (source: NCBI BLink).
Protein Annotations
BioGrid:3617eggNOG:COG0568eggNOG:ENOG410IG1REMBL:AB029916EMBL:AC006922EMBL:AJ250812EMBL:AJ277389
EMBL:AY059768EMBL:AY091182EMBL:CP002685EnsemblPlants:AT2G36990EnsemblPlants:AT2G36990.1entrez:818273Gene3D:1.10.10.10
GeneID:818273Genevisible:Q9LD95GO:GO:0001053GO:GO:0003677GO:GO:0003700GO:GO:0006352GO:GO:0009507
GO:GO:0009536GO:GO:0016987GO:GO:0045893GO:GO:0071482GO:GO:0071483GO:GO:0090351Gramene:AT2G36990.1
hmmpanther:PTHR30603hmmpanther:PTHR30603:SF9HOGENOM:HOG000070749InParanoid:Q9LD95IntAct:Q9LD95InterPro:IPR000943InterPro:IPR007624
InterPro:IPR007627InterPro:IPR007630InterPro:IPR011991InterPro:IPR013324InterPro:IPR013325InterPro:IPR014284InterPro:IPR016262
iPTMnet:Q9LD95KEGG:ath:AT2G36990MINT:MINT-8294381OMA:IYANLRMPaxDb:Q9LD95Pfam:PF04539Pfam:PF04542
Pfam:PF04545Pfam:Q9LD95PhylomeDB:Q9LD95PIR:B84787PIR:T52653PIRSF:PIRSF000767PRIDE:Q9LD95
PRINTS:PR00046PRO:PR:Q9LD95PROSITE:PS00715PROSITE:PS00716ProteinModelPortal:Q9LD95Proteomes:UP000006548RefSeq:NP_565856.1
scanprosite:PS00715scanprosite:PS00716SMR:Q9LD95STRING:3702.AT2G36990.1SUPFAM:SSF88659SUPFAM:SSF88946TAIR:AT2G36990
tair10-symbols:ATSIG6tair10-symbols:SIG6tair10-symbols:SIGFtair10-symbols:SOLDAT8TIGRfam:TIGR02937TIGRFAMs:TIGR02937UniGene:At.1453
UniProt:Q9LD95
Coordinates (TAIR10) chr2:-:15537502..15540016
Molecular Weight (calculated) 61800.70 Da
IEP (calculated) 9.90
GRAVY (calculated) -0.63
Length 547 amino acids
Sequence (TAIR10)
(BLAST)
001: MEATRNLVSS SPSFQTKTHL KSSYSSPSSV VMLHDQTTTP VVNSRHLNSL SRHFPASVLS QEPREESRPL SHALRDDRTS QLTLERRQFD ELVSSREDEK
101: FEQQLLHSTG LWNLLISPLT SETKLPAVVS PLADAELCDV VALAQKALSA SKQAALLVDD TEANPSDNIK DSLSTSSSMS LPEKGNIVRS KRQLERRAKN
201: RRAPKSNDVD DEGYVPQKTS AKKKYKQGAD NDDALQLFLW GPETKQLLTA KEEAELISHI QHLLKLEKVK TKLESQNGCE PTIGEWAEAM GISSPVLKSD
301: IHRGRSSREK LITANLRLVV HIAKQYQNRG LNFQDLLQEG SMGLMKSVEK FKPQSGCRFA TYAYWWIRQS IRKSIFQNSR TIRLPENVYM LLGKVSEARK
401: TCVQEGNYRP SKEELAGHVG VSTEKLDKLL YNTRTPLSMQ QPIWSDQDTT FQEITPDSGI ETPTMSVGKQ LMRNHVRNLL NVLSPKERRI IKLRFGIDGG
501: KQRSLSEIGE IYGLSKERVR QLESRALYRL KQNMNSHGLH AYADLLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)