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AT2G36930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : zinc finger (C2H2 type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc finger (C2H2 type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, U1-type (InterPro:IPR003604), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); Has 726 Blast hits to 418 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 301; Fungi - 225; Plants - 112; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5112eggNOG:KOG3408EMBL:AC006922EMBL:AY045831
EMBL:AY091369EMBL:CP002685EnsemblPlants:AT2G36930EnsemblPlants:AT2G36930.1
entrez:818267GeneID:818267GO:GO:0003676GO:GO:0008270
Gramene:AT2G36930.1hmmpanther:PTHR20863hmmpanther:PTHR20863:SF2IntAct:Q9SJL4
InterPro:IPR003604InterPro:IPR007087InterPro:IPR015880InterPro:IPR022755
KEGG:ath:AT2G36930KO:K14821Pfam:PF12171Pfscan:PS50157
PhylomeDB:Q9SJL4PIR:D84786PRO:PR:Q9SJL4PROSITE:PS00028
PROSITE:PS50157Proteomes:UP000006548RefSeq:NP_565854.1scanprosite:PS00028
SMART:SM00355SMART:SM00451SMR:Q9SJL4STRING:3702.AT2G36930.1
SUPFAM:SSF57667TAIR:AT2G36930UniGene:At.20590UniProt:Q9SJL4
Coordinates (TAIR10) chr2:-:15510002..15511347
Molecular Weight (calculated) 22630.60 Da
IEP (calculated) 10.13
GRAVY (calculated) -0.87
Length 198 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRCPTRKVK KRRLSHKTAR RDKFEVKGDD LVYTELRKPE TEIKPLQLDE DLPGMGQFYC LHCDRYFSNV SVRDDHFKTK KHKKRVNMMM GQAPHSQLDA
101: DLAGGMGMPD NGPKLMSNLV FTELRKPETE DLPGMGQFNC LLCHRNFSNA SVMDYHFKTK KHKKRVKKIE RPAPHSQLDA DLAGGMGMPD NGPKLMSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)