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AT2G36885.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:22923678 (2012): plasma membrane
  • PMID:20061580 (2010): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 172 Blast hits to 172 proteins in 58 species: Archae - 0; Bacteria - 116; Metazoa - 0; Fungi - 0; Plants - 32; Viruses - 0; Other Eukaryotes - 24 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IFTMeggNOG:ENOG4111QGEEMBL:AC006922EMBL:AY086893EMBL:BT002349EMBL:CP002685EnsemblPlants:AT2G36885
EnsemblPlants:AT2G36885.1entrez:818261ExpressionAtlas:Q8S8F1GeneID:818261GO:GO:0005886GO:GO:0016021Gramene:AT2G36885.1
hmmpanther:PTHR36738hmmpanther:PTHR36738:SF1HOGENOM:HOG000012736InterPro:IPR025067KEGG:ath:AT2G36885OMA:FAPFVELPfam:PF13301
PhylomeDB:Q8S8F1Proteomes:UP000006548RefSeq:NP_565853.1SMR:Q8S8F1STRING:3702.AT2G36885.1TAIR:AT2G36885TMHMM:TMhelix
UniGene:At.22565UniProt:Q8S8F1
Coordinates (TAIR10) chr2:-:15482167..15483676
Molecular Weight (calculated) 27493.60 Da
IEP (calculated) 6.89
GRAVY (calculated) 0.36
Length 256 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAITGFSAL SNHISPASSL PSSRLLNSTQ CLSRFSNVSS FPALSTFRRR KIPLTPACSS IVDGDEEIEA RGDDENEIRE TLMLSVSPLP LLLVASLPGA
101: ETVRSVFGPV VEIVKSLNLP DWLVHWGHPG NMAVVLFAMG GYGTYLGFRI RYSDDIEEKA KAKDLHPKLL AGMFFFFALG ATGGVISLLT SDKPIFESPH
201: AVTGLIGLGL LTVQTILPSL FKEKPELRNV HGILGSGIMA LFLVHAAFGL QLGLSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)