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AT2G36700.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: cell wall, plant-type cell wall; EXPRESSED IN: flower; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT2G36710.1); Has 2470 Blast hits to 2427 proteins in 322 species: Archae - 6; Bacteria - 631; Metazoa - 1; Fungi - 195; Plants - 1612; Viruses - 0; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G36700-MONOMEREC:3.1.1.11eggNOG:COG4677EMBL:AC006282EMBL:CP002685EnsemblPlants:AT2G36700EnsemblPlants:AT2G36700.1
entrez:818242Gene3D:2.160.20.10GeneID:818242Genevisible:Q9ZQA4GO:GO:0005576GO:GO:0005618GO:GO:0030599
GO:GO:0042545GO:GO:0045330GO:GO:0045490Gramene:AT2G36700.1gramene_pathway:3.1.1.11gramene_pathway:PWY-1081hmmpanther:PTHR31321
hmmpanther:PTHR31321:SF24HOGENOM:HOG000217409InParanoid:Q9ZQA4InterPro:IPR000070InterPro:IPR011050InterPro:IPR012334InterPro:IPR033131
KEGG:00040+3.1.1.11KEGG:00500+3.1.1.11KEGG:ath:AT2G36700OMA:NTIGCITPaxDb:Q9ZQA4Pfam:PF01095Pfam:Q9ZQA4
PhylomeDB:Q9ZQA4PIR:F84783PRIDE:Q9ZQA4PRO:PR:Q9ZQA4PROSITE:PS00503ProteinModelPortal:Q9ZQA4Proteomes:UP000006548
RefSeq:NP_181208.1scanprosite:PS00503SMR:Q9ZQA4STRING:3702.AT2G36700.1SUPFAM:SSF51126TAIR:AT2G36700UniGene:At.53054
UniPathway:UPA00545UniProt:Q9ZQA4
Coordinates (TAIR10) chr2:-:15384706..15386421
Molecular Weight (calculated) 37069.10 Da
IEP (calculated) 8.70
GRAVY (calculated) -0.16
Length 333 amino acids
Sequence (TAIR10)
(BLAST)
001: MLFFILFLSI ISPIESVDQR IHHPSKCDHL SKFPTKGFTM VLKVSLNGCG RFKRVQDAID ASIGSSQSKT LILIDFGIYR ERFIVHENKN NLVVQGMGYS
101: RTSIEWNNTT ASSNGTFSSF SVAVFGEKFT AYNISFKNTA PAPNPGAVDA QAVALKVVGD KAAFYGCGFY GNQDTLLDQE GRHFFKGCFI EGSIDFIFGN
201: GRSLYEDCTL HSIAKENTIG CITANGKDTL KDRTGFVFVN CKITGSARVW LGRAWRPYAR VIFSKTYMSR VVSLDGWNDM GDPKTQRTVY YGEHRCYGPG
301: ANHSKRVTYA KLLSDVEAAP FTNISFIDGE EWL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)