suba logo
AT2G36590.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : proline transporter 3
Curator
Summary (TAIR10)
Encodes a proline transporter with affinity for gly betaine, proline, and GABA. Protein is expressed in leaves, flowers and siliques but to a much lesser extent in roots.
Computational
Description (TAIR10)
proline transporter 3 (ProT3); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: proline transporter 1 (TAIR:AT2G39890.2); Has 1618 Blast hits to 1612 proteins in 173 species: Archae - 0; Bacteria - 6; Metazoa - 182; Fungi - 169; Plants - 1227; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
BioGrid:3576eggNOG:COG0814eggNOG:KOG1303EMBL:AC006919EMBL:AY086068EMBL:BT004018EMBL:CP002685
EnsemblPlants:AT2G36590EnsemblPlants:AT2G36590.1entrez:818232GeneID:818232Genevisible:Q9SJP9GO:GO:0005886GO:GO:0015193
GO:GO:0015824GO:GO:0016021GO:GO:0035524Gramene:AT2G36590.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF48HOGENOM:HOG000244258
InParanoid:Q9SJP9InterPro:IPR013057KEGG:ath:AT2G36590OMA:PRNILFRPaxDb:Q9SJP9Pfam:PF01490Pfam:Q9SJP9
PhylomeDB:Q9SJP9PIR:D84782PRO:PR:Q9SJP9ProteinModelPortal:Q9SJP9Proteomes:UP000006548RefSeq:NP_181198.1STRING:3702.AT2G36590.1
TAIR:AT2G36590tair10-symbols:ATPROT3tair10-symbols:ProT3TMHMM:TMhelixUniGene:At.26867UniGene:At.71118UniProt:Q9SJP9
Coordinates (TAIR10) chr2:-:15343122..15345167
Molecular Weight (calculated) 47654.20 Da
IEP (calculated) 9.80
GRAVY (calculated) 0.68
Length 436 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSKNRINNV GEGVDIEIPD TAHQISSDSW FQAAFVLTTS INSAYVLGYS GTVMVPLGWI GGVVGLILAT AISLYANTLV AKLHEFGGKR HIRYRDLAGF
101: IYGRKAYCLT WVLQYVNLFM INCGFIILAG SALKAVYVLF RDDHAMKLPH FIAIAGLICA VFAIGIPHLS ALGIWLAVST ILSLIYIVVA IVLSVKDGVK
201: APSRDYEIQG SPLSKLFTIT GAAATLVFVF NTGMLPEIQA TVKQPVVKNM MKALYFQFTV GVLPMFAVVF IGYWAYGSST SPYLLNNVNG PLWVKALANI
301: SAILQSVISL HIFASPTYEY MDTKFGIKGN PLALKNLLFR IMARGGYIAV STLLSALLPF LGDFMSLTGA VSTFPLTFIL ANHMYYKAKN NKLNTLQKLC
401: HWLNVVFFSL MSVAAAIAAL RLIALDSKNF HVFADL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)