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AT2G36485.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: RNA polymerase II, large subunit, CTD (InterPro:IPR006569), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: PCF11P-similar protein 4 (TAIR:AT4G04885.1); Has 129 Blast hits to 129 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 34; Fungi - 49; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y266eggNOG:KOG2071EMBL:AC006919EMBL:AK176107EMBL:AY052345EMBL:AY061907EMBL:CP002685
EnsemblPlants:AT2G36485EnsemblPlants:AT2G36485.1entrez:818223Gene3D:1.25.40.90GeneID:818223Gramene:AT2G36485.1hmmpanther:PTHR15921
HOGENOM:HOG000092971IntAct:Q940Z3InterPro:IPR006569InterPro:IPR008942KEGG:ath:AT2G36485OMA:VNSNARQPfscan:PS51391
PhylomeDB:Q940Z3PROSITE:PS51391Proteomes:UP000006548RefSeq:NP_565849.1SMR:Q940Z3STRING:3702.AT2G36485.1SUPFAM:SSF48464
TAIR:AT2G36485UniGene:At.26499UniProt:Q940Z3
Coordinates (TAIR10) chr2:-:15307059..15307535
Molecular Weight (calculated) 17563.90 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.36
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MENPRRPFDR SRDPGPMKKP RLSEESIRPV NSNARQFLSQ RTLGTATAVT VPPASSRFRV SGRETESSIV SDPSREAYQP QPVHPHYELV NQYKSALAEL
101: TFNSKPIITN LTIIAGENVH AAKAVVTAIC NNILEVNTQF SCPLFCCYNP CFSSQILV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)