AT2G36430.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.658 What is SUBAcon? |
|
||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Plant protein of unknown function (DUF247) | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Plant protein of unknown function (DUF247); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G22550.2); Has 1137 Blast hits to 1027 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1137; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:+:15290211..15291557 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52020.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 5.47 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||
| Length | 448 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVDAAEQPPS TSEGESLLKI HIERMHKKLK EPPRLLSSAA GKPTCSIFRV PQSMIDCNGR CYEPRVVSIG PYHRGQTQLK MIEEHKWRYL NVLLTRTQNL 101: TLEDYMKSVK NVEEVARECY SETIHMDSEE FNEMMVLDGC FLLELFRKVN NLVPFEPNDP LVAMAWVLPF FYRDFLCLEN QIPFFVLETL FNLTRGDNEN 201: ETNASLQSLA FAFFNNMMHR TEEDLARFKE LRAKHLLDLL RSSFIPESEL HTPPATNPGK EKMPSHIIHS ISKLRRAGIK LRELKDAESF LVVRFRHGTI 301: EMPAITVDDF MSSFLENCVA YEQCHVACSM HFTTYATLLD CLTNTYKDVE YLCDQNIIEN YFGTDTELAK FVNSLGRDVA FDITQCYLKD LFEEVNEYYK 401: SSWHVEWATF KFTYFNSPWS FVSALAALVL LVLSVIQTIY TVFQAYQK |
||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)