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AT2G36240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : pentatricopeptide (PPR) repeat-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
pentatricopeptide (PPR) repeat-containing protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 43076 Blast hits to 12816 proteins in 267 species: Archae - 3; Bacteria - 25; Metazoa - 283; Fungi - 440; Plants - 41291; Viruses - 2; Other Eukaryotes - 1032 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC006921EMBL:AK226848EMBL:BT014893EMBL:BT015026EMBL:CP002685
EnsemblPlants:AT2G36240EnsemblPlants:AT2G36240.1entrez:818196Gene3D:1.25.40.10GeneID:818196Genevisible:Q9SJN2Gramene:AT2G36240.1
hmmpanther:PTHR24015hmmpanther:PTHR24015:SF313HOGENOM:HOG000238588InParanoid:Q9SJN2InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9SJN2
KEGG:ath:AT2G36240OMA:IRFYGEMPaxDb:Q9SJN2Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:Q9SJN2
Pfscan:PS51375PhylomeDB:Q9SJN2PIR:D84778PRIDE:Q9SJN2PRO:PR:Q9SJN2PROSITE:PS51375ProteinModelPortal:Q9SJN2
Proteomes:UP000006548RefSeq:NP_181166.3SMR:Q9SJN2STRING:3702.AT2G36240.1SUPFAM:SSF81901TAIR:AT2G36240TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.43415UniGene:At.47576UniProt:Q9SJN2
Coordinates (TAIR10) chr2:+:15195663..15197156
Molecular Weight (calculated) 56359.30 Da
IEP (calculated) 8.13
GRAVY (calculated) -0.26
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MRWNKKNVIS LVSKSHHLPA PITPPLPEIY RIPNPPPKLP EISIPPTLTL SPSPKHSNFV NFLENNLPHH QTLTPQTLLG FLRSKIRNHP LYAHYDFAVF
101: NWAATLDTFR HDHDSFLWMS RSLAATHRFD DLYRLLSFVA ANPCPCSSGI FSCPELEPIF RSAIDAYCRA RKMDYALLAF DTMKRLIDGK PNVGVYNTVV
201: NGYVKSGDMD KALRFYQRMG KERAKPDVCT FNILINGYCR SSKFDLALDL FREMKEKGCE PNVVSFNTLI RGFLSSGKIE EGVKMAYEMI ELGCRFSEAT
301: CEILVDGLCR EGRVDDACGL VLDLLNKRVL PSEFDYGSLV EKLCGENKAV RAMEMMEELW KKGQTPCFIA CTTLVEGLRK SGRTEKASGF MEKMMNAGIL
401: PDSVTFNLLL RDLCSSDHST DANRLRLLAS SKGYEPDETT YHVLVSGFTK EGRRKEGEVL VNEMLDKDML PDIFTYNRLM DGLSCTGKFS RKQVRML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)