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AT2G36200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G28620.1); Has 36148 Blast hits to 27064 proteins in 1553 species: Archae - 221; Bacteria - 3630; Metazoa - 16647; Fungi - 3378; Plants - 2862; Viruses - 97; Other Eukaryotes - 9313 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5059eggNOG:KOG0243EMBL:AC006921EMBL:BX819626EMBL:CP002685EnsemblPlants:AT2G36200EnsemblPlants:AT2G36200.1
entrez:818192ExpressionAtlas:P82266Gene3D:3.40.850.10GeneID:818192Genevisible:P82266GO:GO:0003777GO:GO:0005524
GO:GO:0005737GO:GO:0005874GO:GO:0007018hmmpanther:PTHR24115hmmpanther:PTHR24115:SF536HOGENOM:HOG000116164InParanoid:P82266
InterPro:IPR001752InterPro:IPR019821InterPro:IPR027417InterPro:IPR027640iPTMnet:P82266ncoils:CoilPANTHER:PTHR24115
PaxDb:P82266Pfam:P82266Pfam:PF00225Pfscan:PS50067PhylomeDB:P82266PIR:H84777PRIDE:P82266
PRINTS:PR00380PRO:PR:P82266PROSITE:PS00411PROSITE:PS50067ProteinModelPortal:P82266Proteomes:UP000006548Reactome:R-ATH-983189
RefSeq:NP_181162.2scanprosite:PS00411SMART:SM00129SMR:P82266STRING:3702.AT2G36200.2SUPFAM:SSF52540TAIR:AT2G36200
UniGene:At.37578UniProt:P82266
Coordinates (TAIR10) chr2:-:15180078..15185189
Molecular Weight (calculated) 113689.00 Da
IEP (calculated) 5.70
GRAVY (calculated) -0.66
Length 1009 amino acids
Sequence (TAIR10)
(BLAST)
0001: MSSRHDKEKG VNVQVLLRCR PFSDDELRSN APQVLTCNDL QREVAVSQNI AGKHIDRVFT FDKVFGPSAQ QKDLYDQAVV PIVNEVLEGF NCTIFAYGQT
0101: GTGKTYTMEG ECRRSKSAPC GGLPAEAGVI PRAVKQIFDT LEGQQAEYSV KVTFLELYNE EITDLLAPED LSRVAAEEKQ KKPLPLMEDG KGGVLVRGLE
0201: EEIVTSANEI FTLLERGSSK RRTAETFLNK QSSRSHSLFS ITIHIKEATP EGEELIKCGK LNLVDLAGSE NISRSGARDG RAREAGEINK SLLTLGRVIS
0301: ALVEHLGHVP YRDSKLTRLL RDSLGGRTKT CIIATVSPAV HCLEETLSTL DYAHRAKNIR NKPEVNQKMM KSTLIKDLYG EIERLKAEVY ASREKNGVYM
0401: PKERYYQEES ERKVMAEQIE QMGGQIENYQ KQLEELQDKY VGQVRECSDL TTKLDITEKN LSQTCKVLAS TNEELKKSQY AMKEKDFIIS EQKKSENVLV
0501: QQACILQSNL EKATKDNSSL HQKIGREDKL SADNRKVVDN YQVELSEQIS NLFNRVASCL SQQNVHLQGV NKLSQSRLEA HNKAILEMKK KVKASRDLYS
0601: SHLEAVQNVV RLHKANANAC LEEVSALTTS SACSIDEFLA SGDETTSSLF DELQSALSSH QGEMALFARE LRQRFHTTME QTQEMSEYTS TFFQKLMEES
0701: KNAETRAAEA NDSQINSIID FQKTYEAQSK SDTDKLIADL TNLVSSHIRR QHELVDSRLH NFKDAVSSNK TFLDEHVSAV NNLTKDAKRK WETFSMQAEN
0801: EAREGADFSA AKHCRMELLL QQSVGHAESA FKHCKITHES LKEMTSKQVT DVSSLVRSAC DSNEQHDAEV DSARTAAEKD VTKNSDDIIQ QIERMSEDEK
0901: ASVSKILENV RSHEKTLESF QQDQCCQARC IEDKAQETFQ QQYMEYEPTG ATPTKNEPEI PTKATIESLR AMPIETLVEE FRENNSYESF ATKETKPQQL
1001: TRSPLSQVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)