AT2G36200.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: microtubule motor activity, ATP binding; INVOLVED IN: microtubule-based movement; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Kinesin, motor region, conserved site (InterPro:IPR019821), Kinesin, motor domain (InterPro:IPR001752); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G28620.1); Has 36148 Blast hits to 27064 proteins in 1553 species: Archae - 221; Bacteria - 3630; Metazoa - 16647; Fungi - 3378; Plants - 2862; Viruses - 97; Other Eukaryotes - 9313 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:15180078..15185189 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 113689.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.70 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1009 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSRHDKEKG VNVQVLLRCR PFSDDELRSN APQVLTCNDL QREVAVSQNI AGKHIDRVFT FDKVFGPSAQ QKDLYDQAVV PIVNEVLEGF NCTIFAYGQT 0101: GTGKTYTMEG ECRRSKSAPC GGLPAEAGVI PRAVKQIFDT LEGQQAEYSV KVTFLELYNE EITDLLAPED LSRVAAEEKQ KKPLPLMEDG KGGVLVRGLE 0201: EEIVTSANEI FTLLERGSSK RRTAETFLNK QSSRSHSLFS ITIHIKEATP EGEELIKCGK LNLVDLAGSE NISRSGARDG RAREAGEINK SLLTLGRVIS 0301: ALVEHLGHVP YRDSKLTRLL RDSLGGRTKT CIIATVSPAV HCLEETLSTL DYAHRAKNIR NKPEVNQKMM KSTLIKDLYG EIERLKAEVY ASREKNGVYM 0401: PKERYYQEES ERKVMAEQIE QMGGQIENYQ KQLEELQDKY VGQVRECSDL TTKLDITEKN LSQTCKVLAS TNEELKKSQY AMKEKDFIIS EQKKSENVLV 0501: QQACILQSNL EKATKDNSSL HQKIGREDKL SADNRKVVDN YQVELSEQIS NLFNRVASCL SQQNVHLQGV NKLSQSRLEA HNKAILEMKK KVKASRDLYS 0601: SHLEAVQNVV RLHKANANAC LEEVSALTTS SACSIDEFLA SGDETTSSLF DELQSALSSH QGEMALFARE LRQRFHTTME QTQEMSEYTS TFFQKLMEES 0701: KNAETRAAEA NDSQINSIID FQKTYEAQSK SDTDKLIADL TNLVSSHIRR QHELVDSRLH NFKDAVSSNK TFLDEHVSAV NNLTKDAKRK WETFSMQAEN 0801: EAREGADFSA AKHCRMELLL QQSVGHAESA FKHCKITHES LKEMTSKQVT DVSSLVRSAC DSNEQHDAEV DSARTAAEKD VTKNSDDIIQ QIERMSEDEK 0901: ASVSKILENV RSHEKTLESF QQDQCCQARC IEDKAQETFQ QQYMEYEPTG ATPTKNEPEI PTKATIESLR AMPIETLVEE FRENNSYESF ATKETKPQQL 1001: TRSPLSQVN |
||||||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)