AT2G36120.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Glycine-rich protein family | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a glycine rich protein that is involved in leaf vascular patterning. dot1 mutants have an aberrant open-class venation pattern in leaves and cotyledons, as well as several other leaf development defects. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
DEFECTIVELY ORGANIZED TRIBUTARIES 1 (DOT1); INVOLVED IN: cotyledon vascular tissue pattern formation, phloem or xylem histogenesis, leaf vascular tissue pattern formation, leaf development; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, LP.10 ten leaves visible, petal differentiation and expansion stage; Has 433761 Blast hits to 69211 proteins in 2973 species: Archae - 1140; Bacteria - 107056; Metazoa - 166195; Fungi - 29774; Plants - 43479; Viruses - 5777; Other Eukaryotes - 80340 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:15165468..15166235 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 19995.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.15 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.25 | ||||||||||||||||||||||||||||||||
| Length | 255 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANHKNLFFL CFLIGLGLCS ARRALLSSSE SEAEVAAYGV NSGLSAGLGV GIGGGPGGGS GYGGGSGEGG GAGGHGEGHI GGGGGGGHGG GAGGGGGGGP 101: GGGYGGGSGE GGGAGYGGGE AGGHGGGGGG GAGGGGGGGG GAHGGGYGGG QGAGAGGGYG GGGAGGHGGG GGGGNGGGGG GGSGEGGAHG GGYGAGGGAG 201: EGYGGGAGAG GHGGGGGGGG GSGGGGGGGG GYAAASGYGH GGGAGGGEGS GGYVP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)