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AT2G36100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.933
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Uncharacterised protein family (UPF0497)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Uncharacterised protein family (UPF0497); CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT3G11550.1); Has 599 Blast hits to 599 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 599; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:3527DIP:DIP-59177NeggNOG:ENOG410IYVBeggNOG:ENOG410YJECEMBL:AC007135EMBL:AK228127EMBL:BT003113
EMBL:CP002685EnsemblPlants:AT2G36100EnsemblPlants:AT2G36100.1entrez:818183GeneID:818183Genevisible:Q9SIH4GO:GO:0005829
GO:GO:0005886GO:GO:0007043GO:GO:0016021GO:GO:0016226GO:GO:0042545GO:GO:0042803GO:GO:0048226
GO:GO:0051536Gramene:AT2G36100.1hmmpanther:PTHR11615hmmpanther:PTHR11615:SF116HOGENOM:HOG000237690InParanoid:Q9SIH4IntAct:Q9SIH4
InterPro:IPR006459InterPro:IPR006702iPTMnet:Q9SIH4KEGG:ath:AT2G36100OMA:AHNGNSNPaxDb:Q9SIH4Pfam:PF04535
Pfam:Q9SIH4PhylomeDB:Q9SIH4PIR:H84776PRIDE:Q9SIH4PRO:PR:Q9SIH4ProteinModelPortal:Q9SIH4Proteomes:UP000006548
RefSeq:NP_181154.1STRING:3702.AT2G36100.1TAIR:AT2G36100TIGRfam:TIGR01569TIGRFAMs:TIGR01569TMHMM:TMhelixUniGene:At.42995
UniProt:Q9SIH4
Coordinates (TAIR10) chr2:-:15159744..15160669
Molecular Weight (calculated) 21970.90 Da
IEP (calculated) 8.48
GRAVY (calculated) 0.74
Length 206 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKESTTIDV GEPSTVTKSS SHVVKDAKKK GFVAVASRGG AKRGLAIFDF LLRLAAIAVT IGAASVMYTA EETLPFFTQF LQFQAGYDDL PAFQYFVIAV
101: AVVASYLVLS LPFSIVSIVR PHAVAPRLIL LICDTLVVTL NTSAAAAAAS ITYLAHNGNQ STNWLPICQQ FGDFCQNVST AVVADSIAIL FFIVLIIISA
201: IALKRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)