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AT2G36080.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AP2/B3-like transcriptional factor family protein
Curator
Summary (TAIR10)
Encodes a plant-specific B3 DNA-binding domain transcription factor. Has transcription repressor activity.
Computational
Description (TAIR10)
AP2/B3-like transcriptional factor family protein; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: AP2/B3-like transcriptional factor family protein (TAIR:AT5G06250.2); Has 1380 Blast hits to 1378 proteins in 71 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1380; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:3525eggNOG:ENOG410IXTYeggNOG:ENOG410YIJZEMBL:AC007017
EMBL:AC007135EMBL:AJ441075EMBL:AK117587EMBL:CP002685
EnsemblPlants:AT2G36080EnsemblPlants:AT2G36080.1entrez:818181Gene3D:2.40.330.10
GeneID:818181Genevisible:Q8GYJ2GO:GO:0003677GO:GO:0003700
GO:GO:0005634GO:GO:0006351GO:GO:0045892GO:GO:0080167
hmmpanther:PTHR31140HOGENOM:HOG000239355InParanoid:Q8GYJ2InterPro:IPR003340
InterPro:IPR015300KEGG:ath:AT2G36080OMA:NLECEVDPaxDb:Q8GYJ2
Pfam:PF02362Pfam:Q8GYJ2Pfscan:PS50863PhylomeDB:Q8GYJ2
PIR:F84776PRIDE:Q8GYJ2PRO:PR:Q8GYJ2PROSITE:PS50863
ProteinModelPortal:Q8GYJ2Proteomes:UP000006548RefSeq:NP_181152.2RefSeq:NP_850260.1
SMART:SM01019SMR:Q8GYJ2STRING:3702.AT2G36080.1SUPFAM:SSF101936
TAIR:AT2G36080UniGene:At.23308UniProt:Q8GYJ2
Coordinates (TAIR10) chr2:-:15148612..15151411
Molecular Weight (calculated) 28436.70 Da
IEP (calculated) 6.80
GRAVY (calculated) -0.95
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MSINQYSSDF HYHSLMWQQQ QQQQQHQNDV VEEKEALFEK PLTPSDVGKL NRLVIPKQHA ERYFPLAAAA ADAVEKGLLL CFEDEEGKPW RFRYSYWNSS
101: QSYVLTKGWS RYVKEKHLDA GDVVLFHRHR SDGGRFFIGW RRRGDSSSSS DSYRHVQSNA SLQYYPHAGA QAVESQRGNS KTLRLFGVNM ECQLDSDWSE
201: PSTPDGSNTY TTNHDQFHFY PQQQHYPPPY YMDISFTGDM NRTS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)