suba logo
AT2G36060.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : MMS ZWEI homologue 3
Curator
Summary (TAIR10)
MMZ3/UEV1C encodes a protein that may play a role in DNA damage responses and error-free post-replicative DNA repair by participating in lysine-63-based polyubiquitination reactions. UEV1C can form diubiquitin and triubiquitin chains in combination with UBC13A/UBC35 in vitro. It can also functionally complement an mms2 mutation in budding yeast, both by increasing mms2 mutant viability in the presence of the DNA damaging agent MMS, and by reducing the rate of spontaneous DNA mutation. It can also rescue an mms2 ubc13 double mutant in yeast in combination with UBC13A. MMZ3/UEV1C transcripts are found at moderate levels in most plant organs, but cannot be detected in the pollen or 2 days after germination. Transcript levels do not appear to be stress-inducible.
Computational
Description (TAIR10)
MMS ZWEI homologue 3 (MMZ3); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin E2 variant 1D-4 (TAIR:AT3G52560.1); Has 2912 Blast hits to 2912 proteins in 287 species: Archae - 0; Bacteria - 0; Metazoa - 1566; Fungi - 354; Plants - 579; Viruses - 0; Other Eukaryotes - 413 (source: NCBI BLink).
Protein Annotations
BioGrid:3523eggNOG:ENOG4111MDWeggNOG:KOG0896EMBL:AC007017EMBL:AY062760EMBL:AY093382EMBL:CP002685
EnsemblPlants:AT2G36060EnsemblPlants:AT2G36060.1entrez:818179Gene3D:3.10.110.10GeneID:818179Genevisible:Q9SJ44GO:GO:0005634
GO:GO:0005829GO:GO:0006301GO:GO:0031625GO:GO:0061630GO:GO:0070534hmmpanther:PTHR24067hmmpanther:PTHR24067:SF117
HOGENOM:HOG000036561InParanoid:Q9SJ44InterPro:IPR000608InterPro:IPR016135iPTMnet:Q9SJ44KEGG:ath:AT2G36060KO:K10704
OMA:LANWQRQPaxDb:Q9SJ44Pfam:PF00179Pfam:Q9SJ44Pfscan:PS50127PhylomeDB:Q9SJ44PIR:D84776
PRIDE:Q9SJ44PRO:PR:Q9SJ44PROSITE:PS50127ProteinModelPortal:Q9SJ44Proteomes:UP000006548RefSeq:NP_001078011.1RefSeq:NP_565834.1
RefSeq:NP_850259.1SMR:Q9SJ44STRING:3702.AT2G36060.2SUPFAM:SSF54495TAIR:AT2G36060tair10-symbols:MMZ3tair10-symbols:UEV1C
UniGene:At.27466UniProt:Q9SJ44
Coordinates (TAIR10) chr2:-:15143012..15143998
Molecular Weight (calculated) 16481.70 Da
IEP (calculated) 7.06
GRAVY (calculated) -0.56
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLGSGSSVV VPRNFRLLEE LERGEKGIGD GTVSYGMDDG DDIYMRSWTG TIIGPHNTVH EGRIYQLKLF CDKDYPEKPP TVRFHSRINM TCVNHDTGVV
101: DSKKFGVLAN WQRQYTMEDI LTQLKKEMAA SHNRKLVQPP EGTFF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)