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AT2G35960.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.733
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NDR1/HIN1-like 12
Curator
Summary (TAIR10)
Encodes a protein whose sequence is similar to tobacco hairpin-induced gene (HIN1) and Arabidopsis non-race specific disease resistance gene (NDR1). Expression is not altered in response to cucumber mosaic virus or spermine.
Computational
Description (TAIR10)
NDR1/HIN1-like 12 (NHL12); CONTAINS InterPro DOMAIN/s: Late embryogenesis abundant protein, group 2 (InterPro:IPR004864); BEST Arabidopsis thaliana protein match is: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (TAIR:AT3G52470.1); Has 889 Blast hits to 889 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 889; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC007017EMBL:AK175879EMBL:AY085897EMBL:BT025781EMBL:CP002685EnsemblPlants:AT2G35960EnsemblPlants:AT2G35960.1
entrez:818169GeneID:818169GO:GO:0004871GO:GO:0006952GO:GO:0007165GO:GO:0009506GO:GO:0016021
GO:GO:0046658Gramene:AT2G35960.1hmmpanther:PTHR31415hmmpanther:PTHR31415:SF2HOGENOM:HOG000238706InterPro:IPR004864KEGG:ath:AT2G35960
OMA:QPTKPRFPfam:PF03168PhylomeDB:Q9SJ54PIR:B84775Proteomes:UP000006548RefSeq:NP_181140.1STRING:3702.AT2G35960.1
TAIR:AT2G35960tair10-symbols:NHL12TMHMM:TMhelixUniGene:At.37608UniGene:At.68109UniProt:Q9SJ54
Coordinates (TAIR10) chr2:+:15107150..15107782
Molecular Weight (calculated) 23264.30 Da
IEP (calculated) 10.13
GRAVY (calculated) 0.11
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTKDCGNHG GGGGGGTASR ICGVIIGFII IVLITIFLVW IILQPTKPRF ILQDATVYAF NLSQPNLLTS NFQITIASRN RNSRIGIYYD RLHVYATYRN
101: QQITLRTAIP PTYQGHKEDN VWSPFVYGNS VPIAPFNAVA LGDEQNRGFV TLIIRADGRV RWKVGTLITG KYHLHVRCQA FINLADKAAG VHVGENAVKY
201: MLINKCSVNV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)