suba logo
AT2G35940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : BEL1-like homeodomain 1
Curator
Summary (TAIR10)
Encodes a member of the BEL-like homeodomain protein family. Ecotopic expression in the embryo sac leads to defects in nuclear migration and cellularization and embryo sacs with multiple egg cells. Loss of function alleles have no female gametophyte defects. The ecotopic expression phenotype requires KNAT3 because it can be suppressed by loss of KNAT3 function alleles. Localized to the nucleus but interaction with OFP1 relocates it to the cytoplasm.
Computational
Description (TAIR10)
BEL1-like homeodomain 1 (BLH1); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057), POX (InterPro:IPR006563), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: BEL1-like homeodomain 6 (TAIR:AT4G34610.2); Has 71711 Blast hits to 13510 proteins in 414 species: Archae - 28; Bacteria - 75; Metazoa - 3080; Fungi - 2154; Plants - 2539; Viruses - 2; Other Eukaryotes - 63833 (source: NCBI BLink).
Protein Annotations
BioGrid:3511eggNOG:ENOG410XPMQeggNOG:KOG0773EMBL:AC007017EMBL:AF353094EMBL:AK227272EMBL:AY072175
EMBL:AY096548EMBL:AY099854EMBL:BT008422EMBL:CP002685EMBL:Z35398EnsemblPlants:AT2G35940EnsemblPlants:AT2G35940.1
EnsemblPlants:AT2G35940.2EnsemblPlants:AT2G35940.3entrez:818167Gene3D:1.10.10.60GeneID:818167Genevisible:Q9SJ56GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0005737GO:GO:0006351GO:GO:0009610GO:GO:0009737GO:GO:0010197
GO:GO:0010201GO:GO:0042803GO:GO:0046982Gramene:AT2G35940.1Gramene:AT2G35940.2Gramene:AT2G35940.3hmmpanther:PTHR11850
hmmpanther:PTHR11850:SF111HOGENOM:HOG000239679InParanoid:Q9SJ56IntAct:Q9SJ56InterPro:IPR001356InterPro:IPR006563InterPro:IPR008422
InterPro:IPR009057KEGG:ath:AT2G35940ncoils:CoilOMA:MQPINADPaxDb:Q9SJ56Pfam:PF05920Pfam:PF07526
Pfam:Q9SJ56Pfscan:PS50071PhylomeDB:Q9SJ56PIR:H84774PRIDE:Q9SJ56PRO:PR:Q9SJ56PROSITE:PS00027
PROSITE:PS50071ProteinModelPortal:Q9SJ56Proteomes:UP000006548RefSeq:NP_001031490.1RefSeq:NP_181138.1RefSeq:NP_850256.1SMART:SM00389
SMART:SM00574SMR:Q9SJ56STRING:3702.AT2G35940.1SUPFAM:SSF46689TAIR:AT2G35940tair10-symbols:BLH1tair10-symbols:EDA29
UniGene:At.23033UniProt:Q9SJ56
Coordinates (TAIR10) chr2:-:15089171..15091699
Molecular Weight (calculated) 74467.70 Da
IEP (calculated) 6.87
GRAVY (calculated) -0.74
Length 680 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDND SNNNNNSNNS NNNNTNTNTN NNNSSFVFLD SHAPQPNASQ QFVGIPLSGH EAASITAADN
101: ISVLHGYPPR VQYSLYGSHQ VDPTHQQAAC ETPRAQQGLS LTLSSQQQQQ QQHHQQHQPI HVGFGSGHGE DIRVGSGSTG SGVTNGIANL VSSKYLKAAQ
201: ELLDEVVNAD SDDMNAKSQL FSSKKGSCGN DKPVGESSAG AGGEGSGGGA EAAGKRPVEL GTAERQEIQM KKAKLSNMLH EVEQRYRQYH QQMQMVISSF
301: EQAAGIGSAK SYTSLALKTI SRQFRCLKEA IAGQIKAANK SLGEEDSVSG VGRFEGSRLK FVDHHLRQQR ALQQLGMIQH PSNNAWRPQR GLPERAVSVL
401: RAWLFEHFLH PYPKDSDKHM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYMEEMKEQA KNMGSMEKTP LDQSNEDSAS KSTSNQEKSP MADTNYHMNP
501: NHNGDLEGVT GMQGSPKRLR TSDETMMQPI NADFSSNEKL TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL
601: PHCDSLSSTH HQGFMQTHHG IPIGRRVKIG ETEEYGPATI NGGSSTTTAH SSAAAAAAYN GMNIQNQKRY VAQLLPDFVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)