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AT2G35880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.977
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TPX2 (targeting protein for Xklp2) protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT4G32330.3); Has 16554 Blast hits to 10282 proteins in 807 species: Archae - 18; Bacteria - 1410; Metazoa - 6904; Fungi - 1967; Plants - 895; Viruses - 63; Other Eukaryotes - 5297 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IY16eggNOG:ENOG410YUCHEMBL:AC007017EMBL:AY057620EMBL:AY140090EMBL:CP002685EnsemblPlants:AT2G35880
EnsemblPlants:AT2G35880.1entrez:818161GeneID:818161GO:GO:0005737GO:GO:0005874Gramene:AT2G35880.1hmmpanther:PTHR31358
hmmpanther:PTHR31358:SF10HOGENOM:HOG000153485IntAct:Q9SJ62InterPro:IPR027329KEGG:ath:AT2G35880ncoils:CoilOMA:IQPESEM
Pfam:PF06886PhylomeDB:Q9SJ62PIR:B84774Proteomes:UP000006548RefSeq:NP_565829.1STRING:3702.AT2G35880.1TAIR:AT2G35880
UniGene:At.26267UniProt:Q9SJ62
Coordinates (TAIR10) chr2:-:15063204..15065259
Molecular Weight (calculated) 46699.00 Da
IEP (calculated) 10.46
GRAVY (calculated) -1.04
Length 432 amino acids
Sequence (TAIR10)
(BLAST)
001: MASEDLNIVA ESKKGEENVI VDNSKDMNRP ENLDLSTEKT DTANENGPKD EASKLVKEAD LPESGTSVKS KTAKDNKPVK RKSGTFSRSP RFMSQSSSFP
101: TKGAYTDITR KSIDATTSKT SLKPVVAGGS KPKATPSSSS GVSAKRTSLV SAPLKKQTMP VKTISKDAAS GPTSKLGDEG SKSIKEETAG KDVEEAGSTT
201: AVVADKVSNP LKAEMASKDD EDTRSTTTST STPRGRRSSV GSASGFSFRL EERAEKRKEF YMKLEEKIHA KEVEKTNLQA KSKESQEEEI KRLRKSLTFK
301: AGPMPSFYKE PPPKVELKKI PTTRPKSPKL GRRKSSSDAT GGEAAPRVTK PKDSSSSTVK KPITKSQPKL ETQEKSVKAK EKKKKVKKEE AEKRGEEEKA
401: TAVAAKPEEQ KPNSNNIQVK AEIMASEVVV GG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)