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AT2G35605.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22797472 (2012): mitochondrion
  • PMID:22797472 (2012): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : SWIB/MDM2 domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SWIB/MDM2 domain superfamily protein; CONTAINS InterPro DOMAIN/s: SWIB/MDM2 domain (InterPro:IPR003121), SWIB domain (InterPro:IPR019835); BEST Arabidopsis thaliana protein match is: SWIB/MDM2 domain superfamily protein (TAIR:AT1G31760.1); Has 1125 Blast hits to 1022 proteins in 233 species: Archae - 0; Bacteria - 211; Metazoa - 71; Fungi - 192; Plants - 413; Viruses - 10; Other Eukaryotes - 228 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5531eggNOG:KOG1946EMBL:AC005314EMBL:AC006068
EMBL:AF370234EMBL:AK118403EMBL:AY059124EMBL:AY088833
EMBL:CP002685EnsemblPlants:AT2G35605EnsemblPlants:AT2G35605.1entrez:818127
Gene3D:1.10.245.10GeneID:818127Gramene:AT2G35605.1hmmpanther:PTHR13844
HOGENOM:HOG000225318InterPro:IPR003121InterPro:IPR019835KEGG:ath:AT2G35605
OMA:NFAGESEPfam:PF02201PhylomeDB:Q93W30Proteomes:UP000006548
RefSeq:NP_565810.1SMART:SM00151STRING:3702.AT2G35605.1SUPFAM:SSF47592
SwissPalm:Q93W30TAIR:AT2G35605UniGene:At.19064UniProt:Q93W30
Coordinates (TAIR10) chr2:+:14946161..14947027
Molecular Weight (calculated) 11951.70 Da
IEP (calculated) 10.68
GRAVY (calculated) -0.14
Length 109 amino acids
Sequence (TAIR10)
(BLAST)
001: MSRVFGACRV LMAKAASSTG AKTGRQGTGI LKVVPVSKPL ANFIGENEVS RTTAVKKIWE YIKLNNLQNP VNKREILCDE QLKTIFSGKD TVGFLEISKL
101: LSQHFPKSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)