suba logo
AT2G35500.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : shikimate kinase like 2
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
shikimate kinase like 2 (SKL2); FUNCTIONS IN: shikimate kinase activity, ATP binding; INVOLVED IN: aromatic amino acid family biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CS-like domain (InterPro:IPR007052), Shikimate kinase (InterPro:IPR000623), HSP20-like chaperone (InterPro:IPR008978), CS domain (InterPro:IPR017447); Has 380 Blast hits to 380 proteins in 88 species: Archae - 0; Bacteria - 138; Metazoa - 0; Fungi - 0; Plants - 141; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
BioGrid:3461eggNOG:ENOG410IJWMeggNOG:ENOG410XSXAEMBL:AC005314EMBL:AF412061EMBL:AY074560EMBL:CP002685
EnsemblPlants:AT2G35500EnsemblPlants:AT2G35500.1entrez:818115Gene3D:2.60.40.790Gene3D:3.40.50.300GeneID:818115Genevisible:O82290
GO:GO:0000287GO:GO:0009507Gramene:AT2G35500.1gramene_plant_reactome:1119430gramene_plant_reactome:6874730hmmpanther:PTHR21087hmmpanther:PTHR21087:SF0
HOGENOM:HOG000005904InParanoid:O82290IntAct:O82290InterPro:IPR007052InterPro:IPR008978InterPro:IPR027417InterPro:IPR031322
iPTMnet:O82290KEGG:00400+2.7.1.71KEGG:ath:AT2G35500OMA:DIVESWEPaxDb:O82290Pfam:O82290Pfam:PF01202
Pfam:PF04969Pfscan:PS51203PhylomeDB:O82290PIR:D84769PRIDE:O82290PRO:PR:O82290ProteinModelPortal:O82290
Proteomes:UP000006548RefSeq:NP_565805.1SMR:O82290STRING:3702.AT2G35500.1SUPFAM:SSF49764TAIR:AT2G35500tair10-symbols:SKL2
UniGene:At.13015unipathway:UPA00053UniProt:O82290
Coordinates (TAIR10) chr2:+:14914038..14915909
Molecular Weight (calculated) 42689.40 Da
IEP (calculated) 6.19
GRAVY (calculated) -0.33
Length 387 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAFASGLAI IFNSPSLNPV TTQATFLSSN RIRSSPRVFS GFHSLRRRGF RRFSQNVIPD RFNSFSCNCL SAVSTSTIDY EFTDGGKEVE LRLRLKTGEI
101: LSPKDISVDA DGTSLAVKEK RNGLLITLLE TNHLFEKIMP SETIWYIDED QLVVNMKKVD GELKWPDIVE SWESLTAGMM QLLKGASIYI VGDSTEINQK
201: VSRELAVGLG YSPLDSKELL ESFSKQTIDS WILAEGPDSV AEAESSVLES LSSHVRTVVS TLGGKHGAAG RADQWRHLYS GFTVWVSQTE ATDEESAKEE
301: ARRSKQEREI GYSNADVVVK LQGWDPTHAK SVAQASLSAL KQLIISDKGL PGKKSLYIRL GCRGDWPNIK PPGWDPSSDT GPHPQFT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)