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AT2G35360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.980
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ubiquitin family protein; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955), Domain of unknown function SAYSvFN (InterPro:IPR019387); Has 81 Blast hits to 81 proteins in 37 species: Archae - 0; Bacteria - 0; Metazoa - 40; Fungi - 0; Plants - 33; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG41127HAeggNOG:KOG3249EMBL:AC005314EMBL:AY219071EMBL:AY649261EMBL:CP002685EnsemblPlants:AT2G35360
EnsemblPlants:AT2G35360.1entrez:818103GeneID:818103GO:GO:0016021Gramene:AT2G35360.1hmmpanther:PTHR13527hmmpanther:PTHR13527:SF0
HOGENOM:HOG000005906InterPro:IPR000626InterPro:IPR019387InterPro:IPR029071KEGG:ath:AT2G35360OMA:LRMILRGPfam:PF10260
Pfscan:PS50053PhylomeDB:O82301PIR:F84767PROSITE:PS50053Proteomes:UP000006548RefSeq:NP_181079.1SUPFAM:SSF54236
TAIR:AT2G35360TMHMM:TMhelixUniGene:At.37678UniProt:O82301
Coordinates (TAIR10) chr2:-:14889311..14890799
Molecular Weight (calculated) 25522.80 Da
IEP (calculated) 5.87
GRAVY (calculated) -0.21
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MMNSTEELSS DSTNNGTVEI TYKTIGPARP SQIRVASHIK IRDLRNAIAE KGKFPVSTLR MILRGKALQD EEDGDDLYVT LKDQDSFIVA VIPNPPAGVE
101: SFDDDDDDDL KFKLPPSASR WKRKLYYFLR NKLKLPDIIL MGLFSLSLKM WVIITLWFIL APIAHRWDLG PIFILGTGFS IILLNLGKRQ PGDVSAYSIF
201: NEDFRELPGT YNADRIDRDI RAGQM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)