AT2G35340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : helicase domain-containing protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
maternal effect embryo arrest 29 (MEE29); FUNCTIONS IN: helicase activity, ATP-dependent RNA helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: RNA helicase family protein (TAIR:AT1G32490.1); Has 27494 Blast hits to 21402 proteins in 1991 species: Archae - 43; Bacteria - 4684; Metazoa - 8996; Fungi - 2538; Plants - 1485; Viruses - 1677; Other Eukaryotes - 8071 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14872728..14879615 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 119134.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1044 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MGSNDLNTWV SDKLMVLLGF SQTAVVQYLI AMAKQSKSPG ELVRELVECG FSLSGDTRAF AEEIYARAPR KTPGVNLYQQ QEAEAAMLLK KQKTFSLLEA 0101: DHDEDENNVK KQSASKTGKS DKGQKRFRKK SEQLEDDDDE VVIVREDKRN VRRKVSEDED DGTESEEERL RDQREREELE QHLRERDTAR TRKLTEPKMS 0201: KKEQEEFVRR DSAVDKGDIE SLRKFSWQEY MKKRKQKKVL ELKDDIEDEP YLFGDEKLTE REIREFRYKR EIYELIKKST QEEDNVGEYR MPDAYDQQGS 0301: VDQEKRFAVS VQRYRDMGSA EKMNPFAEQE AWEDHQIENA ALKFGAKNKE VSDNYEFVFE DQIDFIKASV LAGDNYEDEM HAKPSQDSAG KSAFHMLQED 0401: RKALPIYTYR DQLLNAVKDH QVLIIVGETG SGKTTQIPQY LHEAGYTKLG KVGCTQPRRV AAMSVAARVA QEMGGKLGHE VGYSIRFEDC TSEKTILKYM 0501: TDGMLLRELL GEPDLGSYSV IIVDEAHERT LRTDILFGLV KDIARARPDL KLLISSATMD AEKFSDFFDQ APIFRFPGRR YPVDICFTTA PEADYMDAAI 0601: TTVLTIHVKE PLGDVLVFLP GQEEIEAVEE NLKHKIRGLG TKIRELIICP IYANLPSELQ AKIFEPTPEG ARKVVLATNI AETSLTIDGI KYVVDPGFSK 0701: MKSYNPRTGM ESLLVTPISK ASATQRTGRA GRTSPGKCYR LYTAFNYYND LEDNTVPEIQ RTNLASVVLS LKSLGIHNLL NFDFMDPPPS EALIKSLELL 0801: FALGALNQLG ELTKAGRRMA EFPLDPMLSK MIVVSDKYKC SDEIISIAAM LSIGPSIFYR PKDKQVHADN AMKNFHVGNV GDHIAFLKIY NSWKETNYST 0901: QWCYENYIQV RSMKRARDIR DQLEGLLERV EIDVSSNANE LDSIRKSIVA GFFPHTAKLQ KNGSYRTVKH PQTVHIHPAS GLSQVLPRWV VYHQLVLTSK 1001: EYMRQVTELK PEWLIEIAPH YYQLKDVEDA TSKKMPKTSG RAVV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)