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AT2G35310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT5G09780.1); Has 300 Blast hits to 280 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 300; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC004667EMBL:BT002032EMBL:BT020353EMBL:BT021085EMBL:CP002685EnsemblPlants:AT2G35310EnsemblPlants:AT2G35310.1
entrez:818098Gene3D:2.40.330.10GeneID:818098Genevisible:Q5PNU4GO:GO:0003677GO:GO:0005634GO:GO:0006351
GO:GO:0006355Gramene:AT2G35310.1hmmpanther:PTHR31920hmmpanther:PTHR31920:SF20HOGENOM:HOG000131629InParanoid:Q5PNU4InterPro:IPR003340
InterPro:IPR015300KEGG:ath:AT2G35310OMA:ARWGSSWPaxDb:Q5PNU4Pfam:PF02362Pfam:Q5PNU4Pfscan:PS50863
PhylomeDB:Q5PNU4PIR:A84767PRIDE:Q5PNU4PRO:PR:Q5PNU4PROSITE:PS50863ProteinModelPortal:Q5PNU4Proteomes:UP000006548
RefSeq:NP_181074.2SMART:SM01019SUPFAM:SSF101936TAIR:AT2G35310UniGene:At.37682UniProt:Q5PNU4
Coordinates (TAIR10) chr2:+:14864943..14866404
Molecular Weight (calculated) 33215.90 Da
IEP (calculated) 10.48
GRAVY (calculated) -0.60
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MARNSDNDMC KEERKRESFF KVLQRVDISS ENMRALPYDF VRSFSNNELS RKMKIKARWG SSWEVEICKN PRFYFMEKSG WEKFVSDNAL GASEFLTFTH
101: KGNMRFTVNI FMQDGKEMLQ PPQSMSFMAS SRPPKREQGI PSLATTIAAE SNGGGNYKRK LNFEKKKAEE SHNSKRTDKV FSVQRESAGA SSSSVAEFSM
201: FIKKSYLIYM WFPKSVQSIH MPKQRTIFKI HHPNMKKSWN VVYVVSGTKS SFSAGWKGLA QEYPLAVGDT CKFSFIKQHE LILFVSKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)