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AT2G35230.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Contains a plant-specific VQ motif. Involved in endosperm growth and seed size determination. IKU1 is expressed in the early endosperm and its progenitor, the central cell.IKU1 interacts with MINI3 in the yeast two-hybrid system.
Computational
Description (TAIR10)
IKU1; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: regulation of seed growth, endosperm development; LOCATED IN: polar nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G32610.2); Has 32531 Blast hits to 21168 proteins in 1133 species: Archae - 22; Bacteria - 2536; Metazoa - 15453; Fungi - 6059; Plants - 4197; Viruses - 550; Other Eukaryotes - 3714 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXT3eggNOG:ENOG410YRKUEMBL:AC004667EMBL:AK117327EMBL:BT009652EMBL:CP002685EnsemblPlants:AT2G35230
EnsemblPlants:AT2G35230.1entrez:818090ExpressionAtlas:O82170GeneID:818090Genevisible:O82170GO:GO:0009960GO:GO:0043078
GO:GO:0080113hmmpanther:PTHR33783hmmpanther:PTHR33783:SF2HOGENOM:HOG000243607InterPro:IPR008889iPTMnet:O82170KEGG:ath:AT2G35230
OMA:GHEQRPYPaxDb:O82170Pfam:O82170Pfam:PF05678PhylomeDB:O82170PIR:A84766PRIDE:O82170
PRO:PR:O82170ProteinModelPortal:O82170Proteomes:UP000006548RefSeq:NP_181066.1STRING:3702.AT2G35230.1TAIR:AT2G35230tair10-symbols:IKU1
UniGene:At.37693UniGene:At.43464UniProt:O82170
Coordinates (TAIR10) chr2:+:14842871..14844079
Molecular Weight (calculated) 44688.80 Da
IEP (calculated) 10.62
GRAVY (calculated) -1.01
Length 402 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRPRQNDHL GVNRIGKNIR KSPLHQSTFA ASTSNGAAPR LQTQPQVYNI SKNDFRSIVQ QLTGSPSRES LPRPPQNNSL RPQNTRLQRI RPSPLTQLNR
101: PAVPLPSMAP PQSHPQFARQ PPHQPPFPQT TQQPMMGHRD QFWSNTAESP VSEYMRYLQS SLGDSGPNAN QMQPGHEQRP YIPGHEQRPY VPGNEQQPYM
201: PGNEQRPYIP GHEQRSYMPA QSQSQSQPQP QPQPQQHMMP GPQPRMNMQG PLQPNQYLPP PGLVPSPVPH NLPSPRFNAP VPVTPTQPSP MFSQMYGGFP
301: SPRYNGFGPL QSPTSQFLQP SPTGYPNMFS PRSPYPLLSP GVQYPQPLTP NFSFSQIAQQ GSLGPGAGPS QGPPQPPPSP GLMFPLSPSG FFPMPSPRWN
401: DY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)