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AT2G35210.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.763
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : root and pollen arfgap
Curator
Summary (TAIR10)
A member of ARF GAP domain (AGD), A thaliana has 15 members, grouped into four classes.
Computational
Description (TAIR10)
root and pollen arfgap (RPA); FUNCTIONS IN: ARF GTPase activator activity, DNA binding, zinc ion binding; INVOLVED IN: embryo development ending in seed dormancy, pollen development; LOCATED IN: nucleus; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 9 (TAIR:AT5G46750.1); Has 3638 Blast hits to 3466 proteins in 238 species: Archae - 0; Bacteria - 14; Metazoa - 1949; Fungi - 623; Plants - 559; Viruses - 0; Other Eukaryotes - 493 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5347eggNOG:KOG0706EMBL:AC004667EMBL:AK229368EMBL:AY085599EMBL:CP002685EnsemblPlants:AT2G35210
EnsemblPlants:AT2G35210.1entrez:818088GeneID:818088Genevisible:O82171GO:GO:0005096GO:GO:0005794GO:GO:0009555
GO:GO:0009793GO:GO:0046872hmmpanther:PTHR23180hmmpanther:PTHR23180:SF275HOGENOM:HOG000162970InParanoid:O82171InterPro:IPR001164
iPTMnet:O82171KEGG:ath:AT2G35210KO:K12493ncoils:CoilOMA:REDYMSPPaxDb:O82171Pfam:O82171
Pfam:PF01412Pfscan:PS50115PhylomeDB:O82171PIR:H84765PRIDE:O82171PRINTS:PR00405PRO:PR:O82171
PROSITE:PS50115ProteinModelPortal:O82171Proteomes:UP000006548Reactome:R-ATH-199997RefSeq:NP_565801.1RefSeq:NP_973603.1SMART:SM00105
SMR:O82171STRING:3702.AT2G35210.1SUPFAM:SSF57863TAIR:AT2G35210tair10-symbols:AGD10tair10-symbols:MEE28tair10-symbols:RPA
UniGene:At.37696UniProt:O82171
Coordinates (TAIR10) chr2:+:14836206..14837946
Molecular Weight (calculated) 43099.60 Da
IEP (calculated) 9.57
GRAVY (calculated) -0.60
Length 395 amino acids
Sequence (TAIR10)
(BLAST)
001: MASENLNDKI SVFKKLKAKS DNKICFDCNA KNPTWASVTY GIFLCIDCSA VHRSLGVHIS FVRSTNLDSW SSEQLKMMIY GGNNRAQVFF KQYGWSDGGK
101: TEAKYTSRAA DLYKQILAKE VAKSKAEEEL DLPPSPPDST QVPNGLSSIK TSEALKESNT LKQQEKPDVV PVSPRISRSV KKPLGAKKTG KTGGLGARKL
201: TTKSSGTLYD QKPEESVIIQ ATSPVSAKSA RSSFSSRFDY ADNVQNREDY MSPQVVSHVA PPKSSGFFEE ELEMNGGRFQ KKPITSSSKL QIQETDEARK
301: KFTNAKSISS AQYFGNDNNS ADLEAKSSLK KFSGSSAISS ADLFGDGDGD FPLDLTAGDL LNRLSLQAQQ DISSLKNMAE ETKKKLGSVA SSLWV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)