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AT2G35190.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : novel plant snare 11
Curator
Summary (TAIR10)
plant-specific SNARE located in cell plate of dividing cells. cofractionates with the cytokinesis-specific syntaxin, KNOLLE, which is required for the formation of the cell plate.
Computational
Description (TAIR10)
novel plant snare 11 (NPSN11); FUNCTIONS IN: protein transporter activity, SNAP receptor activity; INVOLVED IN: cytokinesis; LOCATED IN: plasma membrane, cell plate; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Target SNARE coiled-coil domain (InterPro:IPR000727), Sec20 (InterPro:IPR005606); BEST Arabidopsis thaliana protein match is: novel plant snare 13 (TAIR:AT3G17440.1); Has 871 Blast hits to 814 proteins in 236 species: Archae - 12; Bacteria - 157; Metazoa - 137; Fungi - 78; Plants - 153; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).
Protein Annotations
BioGrid:3432eggNOG:ENOG410IGS9eggNOG:ENOG410Y048EMBL:AC004667EMBL:AF439822EMBL:AY143839EMBL:CP002685
EnsemblPlants:AT2G35190EnsemblPlants:AT2G35190.1entrez:818086GeneID:818086Genevisible:Q944A9GO:GO:0000149GO:GO:0000911
GO:GO:0005484GO:GO:0005886GO:GO:0009504GO:GO:0015031GO:GO:0016021GO:GO:0061025Gramene:AT2G35190.1
hmmpanther:PTHR21230hmmpanther:PTHR21230:SF27HOGENOM:HOG000240078InParanoid:Q944A9IntAct:Q944A9InterPro:IPR000727InterPro:IPR005606
KEGG:ath:AT2G35190KO:K08494ncoils:CoilOMA:QINDIFRPaxDb:Q944A9Pfam:PF03908Pfam:Q944A9
Pfscan:PS50192PIR:F84765PRIDE:Q944A9PRO:PR:Q944A9PROSITE:PS50192ProteinModelPortal:Q944A9Proteomes:UP000006548
RefSeq:NP_565800.1SMART:SM00397SMR:Q944A9STRING:3702.AT2G35190.1SUPFAM:SSF58038SwissPalm:Q944A9TAIR:AT2G35190
tair10-symbols:ATNPSN11tair10-symbols:NPSN11tair10-symbols:NSPN11TMHMM:TMhelixUniGene:At.12726UniProt:Q944A9
Coordinates (TAIR10) chr2:+:14831087..14832979
Molecular Weight (calculated) 29874.00 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.46
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPISAVSEE LAEIEGQIND IFRALSNGFQ KLEKIKDANR QSRQLEELTD KMRDCKSLIK DFDREIKSLE SGNDASTNRM LNDRRQSMVK ELNSYVALKK
101: KYSSNLASNN KRVDLFDGPG EEHMEENVLL ASNMSNQELM DKGNSMMDDT DQAIERGKKI VQETINVGTD TSAALKAQTE QMSRVVNELD SIHFSLKKAS
201: KLVKEIGRQV ATDKCIMAFL FLIVIGVIAI IIVKIVNPNN KDIRDIPGVG LAPPAMNRRL LWNHY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)