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AT2G35040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:22923678 (2012): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : AICARFT/IMPCHase bienzyme family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AICARFT/IMPCHase bienzyme family protein; FUNCTIONS IN: phosphoribosylaminoimidazolecarboxamide formyltransferase activity, IMP cyclohydrolase activity, catalytic activity; INVOLVED IN: response to cold, purine nucleotide biosynthetic process; LOCATED IN: stromule, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: AICARFT/IMPCHase bienzyme, transformylase domain (InterPro:IPR013982), AICARFT/IMPCHase bienzyme (InterPro:IPR002695), MGS-like (InterPro:IPR011607); Has 10802 Blast hits to 10325 proteins in 2522 species: Archae - 69; Bacteria - 5512; Metazoa - 346; Fungi - 183; Plants - 62; Viruses - 6; Other Eukaryotes - 4624 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G35040-MONOMERBioCyc:ARA:GQT-2679-MONOMEReggNOG:COG0138eggNOG:KOG2555EMBL:AY091122EMBL:AY133727EMBL:CP002685
EnsemblPlants:AT2G35040EnsemblPlants:AT2G35040.1entrez:818069ExpressionAtlas:Q8RWT5Gene3D:3.40.140.20Gene3D:3.40.50.1380GeneID:818069
GO:GO:0003937GO:GO:0004643GO:GO:0006164GO:GO:0009409GO:GO:0009507GO:GO:0009536GO:GO:0009570
GO:GO:0010319Gramene:AT2G35040.1gramene_pathway:3.5.4.10gramene_pathway:PWY-6124HAMAP:MF_00139hmmpanther:PTHR11692HOGENOM:HOG000230373
InterPro:IPR002695InterPro:IPR011607InterPro:IPR016193InterPro:IPR024051KEGG:00230+3.5.4.10+2.1.2.3KEGG:00670+2.1.2.3OMA:DDQQFRK
PANTHER:PTHR11692Pfam:PF01808Pfam:PF02142PhylomeDB:Q8RWT5PIRSF:PIRSF000414Proteomes:UP000006548Reactome:R-ATH-73817
RefSeq:NP_850240.1SMART:SM00798SMART:SM00851SMR:Q8RWT5STRING:3702.AT2G35040.1SUPFAM:SSF52335SUPFAM:SSF53927
TAIR:AT2G35040TIGRfam:TIGR00355TIGRFAMs:TIGR00355UniGene:At.43666UniGene:At.66385unipathway:UPA00074UniProt:Q8RWT5
Coordinates (TAIR10) chr2:-:14765347..14768269
Molecular Weight (calculated) 64910.10 Da
IEP (calculated) 6.91
GRAVY (calculated) -0.24
Length 596 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSSAATATS VSARSGDILC GLFRKKSVAP FRFTQPVYRT SLCPSFVAVR AMAESQTAQR NQPQSSGSSG EKQALISLSD KRDLASLGNG LQELGYTIVS
101: TGGTASTLEN AGVSVTKVEK LTHFPEMLDG RVKTLHPNIH GGILARRDVE HHMEALNEHG IGTFDVVVVN LYPFYEKVTA PGGISFEDGI ENIDIGGPAM
201: IRAAAKNHKD VLIVVDSGDY QAVLEYLKGG QSDQQFRRKL AWKAFQHVAA YDSAVSEWLW KQTEGKEKFP PSFTVPLVLK SSLRYGENPH QKAAFYVDKS
301: LAEVNAGGIA TAIQHHGKEM SYNNYLDADA AWNCVSEFEN PTCVVVKHTN PCGVASRDDI LEAYRLAVKA DPVSAFGGIV AFNVEVDEVL AREIREFRSP
401: TDGETRMFYE IVVAPKYTAK GLEVLKGKSK TLRILEAKKN DQGKLSLRQV GGGWLAQDSD DLTPEDISFN SVSDKTPTES ELADAKFAWL CVKHVKSNAI
501: VIAKNNCMLG MGSGQPNRVE SLRIAFKKAG EEAKGAALAS DAFFPFAWKD AVEEACQMGI GVIAEPGGSI RDQDAIDCCK KYGVSLLFTN VRHFRH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)