AT2G34970.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Trimeric LpxA-like enzyme | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Trimeric LpxA-like enzyme; FUNCTIONS IN: binding, transferase activity, translation initiation factor activity, nucleotidyltransferase activity; INVOLVED IN: biosynthetic process, regulation of translational initiation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004), eIF4-gamma/eIF5/eIF2-epsilon (InterPro:IPR003307), Armadillo-type fold (InterPro:IPR016024), Nucleotidyl transferase (InterPro:IPR005835); BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzyme (TAIR:AT4G18300.1); Has 8121 Blast hits to 7961 proteins in 1548 species: Archae - 574; Bacteria - 3735; Metazoa - 1296; Fungi - 469; Plants - 387; Viruses - 0; Other Eukaryotes - 1660 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14746340..14748532 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 81868.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.29 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.37 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 730 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGAQKKGGAA ARVSEDAEVQ SRHRLQAILL ADSFATKFRP VTLERPKVLL PIVNVPMIDY TLAWLESAGI EEVFVFCCAH SMQVIEYLEK SEWYSHPNLL 101: VRTIESHKSI SAGDALRYMY EQQTETSQIQ GDFVLVSGDT VSNMPLADLI QEHRERKKKD EKAIMTMVIK QSKSSPLTHQ SRLGTDQLFI AVDPLTKQLL 201: HYEEDKIDHP SGSVCLEKSL LDTNPSVLVC NDMQDCYIDI CSPEVLSLFE DNFDYQHLRR HFVKGVLVDD IMGYKIFTHE IHSSYAGRID NFRSYDTVSK 301: DIIQRWTYPY VPDINFSGNR PLKLGRQGIY KASDVVQSRS ADVGASTVIG YGTKIGHGDK IMNSVIGNGC SIGSNVVIEG SYIWNNVTIE DGCEIRNAIV 401: CDGVKIRAGA VLQPGVVLSF NVVVGRDFVV PAYSKVSLLQ QPTTEDSDEE LEYADSSSGT ADHLSGLNLQ MESKASELGP DGAGYIWEVC EGAHDEEWKH 501: SVAPIPKDKL SEITQAIDDD DTDDESVVPT SGELKSDADS INTDVNDPND DYYYFEKEVE GTVLRAVEEN IKVDLVTMEI NGLRLSFNME SADCAGATFF 601: SMIKLALDTP HNSGSELYKN AASIITKWKD LLGFYAKKID EQIEVIMKFE EMCQESHKEL GPLFTQILHL LYDKDVLQED AILRWEEEKA GADEADKVYL 701: KQCDTFIQWL KEASEEEDED DEDEEEEEDN |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)