suba logo
AT2G34940.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : golgi 10888666
SwissProt : cytosol 16381842
SwissProt : golgi 16381842
SwissProt : vacuole 16381842
SwissProt : plasma membrane 16381842
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:16980567 (2006): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : VACUOLAR SORTING RECEPTOR 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VACUOLAR SORTING RECEPTOR 5 (VSR5); FUNCTIONS IN: calcium ion binding; INVOLVED IN: protein targeting to vacuole; LOCATED IN: integral to plasma membrane, Golgi transport complex; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Protease-associated PA (InterPro:IPR003137), EGF-like calcium-binding, conserved site (InterPro:IPR018097), EGF-like calcium-binding (InterPro:IPR001881), Growth factor, receptor (InterPro:IPR009030); BEST Arabidopsis thaliana protein match is: VACUOLAR SORTING RECEPTOR 6 (TAIR:AT1G30900.1); Has 10681 Blast hits to 5483 proteins in 264 species: Archae - 0; Bacteria - 175; Metazoa - 9320; Fungi - 5; Plants - 378; Viruses - 0; Other Eukaryotes - 803 (source: NCBI BLink).
Protein Annotations
BioGrid:3405eggNOG:ENOG410IHDNeggNOG:ENOG41105IFEMBL:AC004238EMBL:BT004565EMBL:CP002685EnsemblPlants:AT2G34940
EnsemblPlants:AT2G34940.1entrez:818059ExpressionAtlas:O64758GeneID:818059Genevisible:O64758GO:GO:0000139GO:GO:0005509
GO:GO:0015031GO:GO:0016021GO:GO:0030665GO:GO:0031902Gramene:AT2G34940.1hmmpanther:PTHR22765hmmpanther:PTHR22765:SF56
HOGENOM:HOG000241019InParanoid:O64758InterPro:IPR001881InterPro:IPR003137InterPro:IPR018097iPTMnet:O64758KEGG:ath:AT2G34940
MINT:MINT-8064333OMA:EYELWANPaxDb:O64758Pfam:O64758Pfam:PF02225PhylomeDB:O64758PIR:T00476
PRIDE:O64758PRIDE:Q0WTC8PRO:PR:O64758PROSITE:PS00010PROSITE:PS00022PROSITE:PS01186PROSITE:PS01187
ProteinModelPortal:O64758Proteomes:UP000006548RefSeq:NP_181040.1scanprosite:PS01187SMART:SM00179SMR:O64758STRING:3702.AT2G34940.1
SUPFAM:SSF52025TAIR:AT2G34940tair10-symbols:BP80-3;2tair10-symbols:VSR3;2tair10-symbols:VSR5TMHMM:TMhelixUniGene:At.37737
UniProt:O64758UniProt:Q0WTC8
Coordinates (TAIR10) chr2:+:14740497..14743314
Molecular Weight (calculated) 69260.60 Da
IEP (calculated) 5.52
GRAVY (calculated) -0.34
Length 618 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPSNKGTVL ALILALTMVV VNGFSSRFFV EKSSLTVLNS WEMGAKHDAA IANFGLPKYG GFMIGSVVYA GQDAYGCNSF NKTFNTKSPY PKILLIDRGV
101: CNFALKIWNG QQSGAAAVLL ADNIVEPLIT MDTPQDEDPD FIDKVKIPSA LILRSFGDSL KKALKRGEEV ILKMDWSESI PNPDERVEYE LWANTNDECG
201: VHCDKQIDFI KNFKGMAQIL EKGGYTLFRP HYISWVCPKE LLLSKQCRTQ CINQGRYCAL DTKQEFEDGY NGKDVVYENL RQLCVHKVAK EKNTSWVWWD
301: YVTDFNIRCS MKEKKYSREC AETIVESLGL SLEKIKKCIG DPDADVENEV LKAEEAFQLG QENRGIVTIF PTLMINNAQY RGKLERTAVL KAICSGFKER
401: TEPSICLNSD IETNECLIEN GGCWQDKRSN VTACKDTFRG RVCECPVVDG VQYKGDGYTS CKPYGPARCS MNNGDCWSET RKGLTFSSCS DSETSGCRCP
501: LGFLGDGLKC EDIDECKEKS ACKCDGCKCK NNWGGYECKC SNNSIYMKEE DTCIERRSGS RSRGLFTIVV LTAIAGISLG AYIFYKYHLQ SYMDSEIVSI
601: MSQYIPLDSQ SINQDSFK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)