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AT2G34910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: root hair specific 4 (TAIR:AT1G30850.1); Has 43 Blast hits to 43 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYYAeggNOG:ENOG410YJXTEMBL:AC004238EMBL:BT011617EMBL:BT015381EMBL:CP002685EnsemblPlants:AT2G34910
EnsemblPlants:AT2G34910.1entrez:818056GeneID:818056Gramene:AT2G34910.1hmmpanther:PTHR33672hmmpanther:PTHR33672:SF4HOGENOM:HOG000115002
KEGG:ath:AT2G34910OMA:ASPRTCIPhylomeDB:O64755PIR:T00473Proteomes:UP000006548RefSeq:NP_181037.1TAIR:AT2G34910
UniGene:At.19597UniGene:At.66369UniProt:O64755
Coordinates (TAIR10) chr2:+:14726900..14727766
Molecular Weight (calculated) 32176.40 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.53
Length 288 amino acids
Sequence (TAIR10)
(BLAST)
001: MSPPALVVFE DGLTQKWSND EWQGFSVYPG ENPNPNINFL VQKATLQNQM TVSRPSLNEE SFRMVLPLAM SPPRDNAVPL PVLPEPMMKP RKKLSHQESM
101: LSLRKSRYPE KNFYQEEENF KCNAFCLSLP GFGKRPVRSP KSEDSIKKKM IKASSFSNST VSLSASLEKF ECGSWASTTA LTRENGRLYI DLPVEMIKCG
201: GGDVQEPVSS GFFFDKETGS LALRSVLKKS SSLSGRQLRD LAETSPQRRV RFSTTTSDSC PASPRTCITP RLLKARDDFN TFLAAQNA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)