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AT2G34900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcription factor GTE6
Curator
Summary (TAIR10)
Encodes a member of the BET subgroup of bromodomain proteins, a novel class of putative transcription factors. Its expression is induced during seed imbibition and downregulated during germination. Seeds of a loss-of-function mutant allele, imb1, show impaired cotyledon greening during germination in abscisic acid (ABA) and express higher levels of ABI5 protein than the wild type. Moreover, imb1 seeds are deficient in the phytochrome A (phyA)-mediated very-low-fluence response of germination.
Computational
Description (TAIR10)
IMBIBITION-INDUCIBLE 1 (IMB1); CONTAINS InterPro DOMAIN/s: Transcription factor GTE6 (InterPro:IPR017413), Bromodomain, conserved site (InterPro:IPR018359), Bromodomain (InterPro:IPR001487); BEST Arabidopsis thaliana protein match is: general transcription factor group E6 (TAIR:AT3G52280.1); Has 6743 Blast hits to 5369 proteins in 274 species: Archae - 2; Bacteria - 32; Metazoa - 4105; Fungi - 1178; Plants - 592; Viruses - 0; Other Eukaryotes - 834 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5076eggNOG:KOG1474EMBL:AC004238EMBL:AK222242EMBL:AK230434EMBL:AY180100EMBL:BT026469
EMBL:CP002685EnsemblPlants:AT2G34900EnsemblPlants:AT2G34900.1entrez:818055ExpressionAtlas:Q84XV2Gene3D:1.20.920.10GeneID:818055
Genevisible:Q84XV2GO:GO:0005634GO:GO:0006351GO:GO:0010030GO:GO:0045893hmmpanther:PTHR22880hmmpanther:PTHR22880:SF163
HOGENOM:HOG000241680InParanoid:Q84XV2InterPro:IPR001487InterPro:IPR017413InterPro:IPR018359InterPro:IPR027353KEGG:ath:AT2G34900
ncoils:CoilOMA:ENEEREHPaxDb:Q84XV2Pfam:PF00439Pfam:PF17035Pfam:Q84XV2Pfscan:PS50014
Pfscan:PS51525PhylomeDB:Q84XV2PIR:T00472PIRSF:PIRSF038154PRIDE:Q84XV2PRINTS:PR00503PRO:PR:Q84XV2
PROSITE:PS00633PROSITE:PS50014PROSITE:PS51525ProteinModelPortal:Q84XV2Proteomes:UP000006548RefSeq:NP_181036.2scanprosite:PS00633
SMART:SM00297SMR:Q84XV2STRING:3702.AT2G34900.1SUPFAM:SSF47370TAIR:AT2G34900tair10-symbols:GTE01tair10-symbols:GTE1
tair10-symbols:IMB1UniGene:At.37743UniProt:Q84XV2
Coordinates (TAIR10) chr2:-:14723333..14725562
Molecular Weight (calculated) 43444.50 Da
IEP (calculated) 6.30
GRAVY (calculated) -0.72
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVHVKEEPV LVPNCDVENT ELAVFNGNGE SELENFGTCV DEITDRVNQL EQKVVEVEHF YSTKDGAAQT NTSKSNSGGK KIAISQPNNS KGNSAGKEKS
101: KGKHVSSPDL MRQFATMFRQ IAQHKWAWPF LEPVDVKGLG LHDYYKVIEK PMDLGTIKKK MESSEYSNVR EIYADVRLVF KNAMRYNEEK EDVYVMAESL
201: LEKFEEKWLL IMPKLVEEEK KQVDEEAEKH ANKQLTMEAA QAEMARDLSN ELYEIDLQLE KLRESVVQRC RKLSTQEKKG LSAALGRLSP EDLSKALKMV
301: SESNPSFPAG APEVELDIDV QTDVTLWRLK VFVQEALKAA NKSSGGTNAQ NNNNTGTGEI NKNNAKRRRE ISDAINKASI KRAKKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)