AT2G34680.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.951 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Outer arm dynein light chain 1 protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
AUXIN-INDUCED IN ROOT CULTURES 9 (AIR9); INVOLVED IN: response to auxin stimulus, lateral root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G78230.1); Has 5746 Blast hits to 1796 proteins in 310 species: Archae - 0; Bacteria - 1053; Metazoa - 771; Fungi - 422; Plants - 290; Viruses - 42; Other Eukaryotes - 3168 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr2:-:14616947..14628300 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 186872.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.13 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.29 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1708 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MEEVAAKVEE ETVETNVDAV KEDNATIANE SRSPESVSAV SVVSNRAAST KKKPVISSNL IKPTASSSLR VSGTTPVTIR RNSTGGVTEN LAGTSKVLPK 0101: QVSTTASRTD PVRRSLPELR KSSVSSLSAK TVSKPSLSES KKSVPVSPGS RSLTKSTGFS LSKPESSARP AMSVSVSSKR APSSSVDSSG SRTSSGRLHS 0201: TLTSGRTVSK VSSPSAGSSP SVSSSIRSKS FSSPLDRTSN FSGRKKTSTP ESRDSRLIIL PKVEVKAGDD MRLDLRGHRI RSLTSGGLHL SPNLEFVYLR 0301: DNLLSTLEGI EILNRVKVLD LSFNDFKGPG FEPLENCKML QQLYLAGNQI TSLASLPQLP NLEFLSVAQN KLKSLAMASQ PRLQVLAASK NKITTLKDFP 0401: YLPVLEHLRV EENPLLKISH LEAASILLVG PTLKKFNDRD LSREEVAIAK RYPPQTALCL REGWEFCKSD LAAESTFRFL VERWKDTLPS GYLIKEAHVD 0501: RPSEEAPCQC HFGLFQESPT ATDQELALKF QWSVADRSLS NFVPILNATK EVYWPKREDI GKILKIECTP VMAETEYPSI FAISSPVQRG KGIPKVVSLE 0601: LNGELVEGNI IKGQAVVAWC GGTPGKCITS WLRRKWNGSP VVIDGAEDEE YMLSLDDVGS SMVFMYTPVT EGGARGEPQY KYTEFVKAAP PSVSNVRITG 0701: DAVEGCVLKG VGDYFGGKEG PSKFEWLRKN KETGELSLIS AGTSEYTLTQ EDVGTHVTFV YIPANFEGLE GEPVSTSSSV VKPAPPKVTD AKIVGDLREN 0801: SKVTVTGTVT GGTEGSSRVQ WFKSSCSILE GDNSLEELST SKVAKSFRIP LGAVGYYIVA KYTPMTPDGE CGEPVYVLSE RAVETLPPSL NFLSITGDNI 0901: EGGILTASYG YIGGHEGKSK YEWHYHKAEN DLPGALIPEA SGLLQYTITK EAIGKFISFQ CIPVRDDGIV GEPRSCMSQE RVRPGNPSTV SLHVVGALVE 1001: GTMLSAEKEY WGGEEGASVF RWFRTNSDGT PCEIKGATTS SYLLSVGDIG YFISVSYEPV RNDRARGPTA ISEIAGPIVA GHPNCQSLEF LGSMIEGQRL 1101: SFVASYTGGM KGNCYLEWVR VKNNGVKEIL SSDEFLDLSL DDVGESIELI YTPVREDGIE GSPRSIRTDG IAPANPMGLE LLIPDCCEKQ EVVPHKTYFG 1201: GHEGVGEYIW YRTKVKLHGS ALTEISYAGE EVVVCCRTLK YTPSLEDVGA YLVLYWIPTR VDGRSGKPVV VITNSPVAPA DPEVSNVRVK KLFSDAYSGE 1301: GEYFGGHEGP SLFSWYREND GTIDLIDGAN SKTYEVTESD YNCRILFGYT PVRSDSVVGE LKMSEPTEII LPEVPKVDML AFTGKAVQGD VLTAVQVIPK 1401: TEIQQLVWSK YKGDIQYQWF RSPESGDKIS YEALSSEISC SYKVRFEDIG RCLKCECVVH DVFGRSSELA YAETDPISPG FPRIEKLEIE GQGFHTNLYA 1501: VRGNYFGGKE GKSKIQWLRS MVGSPDLISI PGETGRMYEA NVDDVGYRLV VVYTPIREDG VQGHPVSAST EPVAVEPDIL KEVRQKLETG LVKFEVLCDK 1601: DPYPKKIVGE GNLERRMLEM NRKRIKVVKP GSKTSFATTE VRGSYGPPFH VETFRNDQRR LRIVVDSENE VDIVVQSRHL RDVIVLVIRG FAQRFNSTSL 1701: NSLLKIDT |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)