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AT2G34680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.944
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:21433285 (2011): plasma membrane
  • PMID:20374526 (2010): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Outer arm dynein light chain 1 protein
Curator
Summary (TAIR10)
isolated from differential screening of a cDNA library from auxin-treated root culture. sequence does not show homology to any known proteins and is predicted to be extracellular.
Computational
Description (TAIR10)
AUXIN-INDUCED IN ROOT CULTURES 9 (AIR9); INVOLVED IN: response to auxin stimulus, lateral root morphogenesis; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Outer arm dynein light chain 1 protein (TAIR:AT1G78230.1); Has 5746 Blast hits to 1796 proteins in 310 species: Archae - 0; Bacteria - 1053; Metazoa - 771; Fungi - 422; Plants - 290; Viruses - 42; Other Eukaryotes - 3168 (source: NCBI BLink).
Protein Annotations
eggNOG:COG4886eggNOG:KOG0531EMBL:AC003096EMBL:AK228999EMBL:CP002685EMBL:DQ291137EnsemblPlants:AT2G34680
EnsemblPlants:AT2G34680.1entrez:818033Gene3D:3.80.10.10GeneID:818033Genevisible:F4IIU4GO:GO:0005819GO:GO:0007067
GO:GO:0009524GO:GO:0009574GO:GO:0051301GO:GO:0055028Gramene:AT2G34680.1hmmpanther:PTHR24365hmmpanther:PTHR24365:SF274
HOGENOM:HOG000006179InParanoid:F4IIU4InterPro:IPR001611InterPro:IPR025875InterPro:IPR032675iPTMnet:F4IIU4KEGG:ath:AT2G34680
ncoils:CoilOMA:TEISYAGPaxDb:F4IIU4Pfam:F4IIU4Pfam:PF12799Pfscan:PS51450PIR:T01367
PRIDE:F4IIU4PRO:PR:F4IIU4PROSITE:PS51450ProteinModelPortal:F4IIU4Proteomes:UP000006548RefSeq:NP_181015.7STRING:3702.AT2G34680.1
SUPFAM:0046394TAIR:AT2G34680tair10-symbols:AIR9UniGene:At.46274UniGene:At.67101UniProt:F4IIU4
Coordinates (TAIR10) chr2:-:14616947..14628300
Molecular Weight (calculated) 186872.00 Da
IEP (calculated) 6.13
GRAVY (calculated) -0.29
Length 1708 amino acids
Sequence (TAIR10)
(BLAST)
0001: MEEVAAKVEE ETVETNVDAV KEDNATIANE SRSPESVSAV SVVSNRAAST KKKPVISSNL IKPTASSSLR VSGTTPVTIR RNSTGGVTEN LAGTSKVLPK
0101: QVSTTASRTD PVRRSLPELR KSSVSSLSAK TVSKPSLSES KKSVPVSPGS RSLTKSTGFS LSKPESSARP AMSVSVSSKR APSSSVDSSG SRTSSGRLHS
0201: TLTSGRTVSK VSSPSAGSSP SVSSSIRSKS FSSPLDRTSN FSGRKKTSTP ESRDSRLIIL PKVEVKAGDD MRLDLRGHRI RSLTSGGLHL SPNLEFVYLR
0301: DNLLSTLEGI EILNRVKVLD LSFNDFKGPG FEPLENCKML QQLYLAGNQI TSLASLPQLP NLEFLSVAQN KLKSLAMASQ PRLQVLAASK NKITTLKDFP
0401: YLPVLEHLRV EENPLLKISH LEAASILLVG PTLKKFNDRD LSREEVAIAK RYPPQTALCL REGWEFCKSD LAAESTFRFL VERWKDTLPS GYLIKEAHVD
0501: RPSEEAPCQC HFGLFQESPT ATDQELALKF QWSVADRSLS NFVPILNATK EVYWPKREDI GKILKIECTP VMAETEYPSI FAISSPVQRG KGIPKVVSLE
0601: LNGELVEGNI IKGQAVVAWC GGTPGKCITS WLRRKWNGSP VVIDGAEDEE YMLSLDDVGS SMVFMYTPVT EGGARGEPQY KYTEFVKAAP PSVSNVRITG
0701: DAVEGCVLKG VGDYFGGKEG PSKFEWLRKN KETGELSLIS AGTSEYTLTQ EDVGTHVTFV YIPANFEGLE GEPVSTSSSV VKPAPPKVTD AKIVGDLREN
0801: SKVTVTGTVT GGTEGSSRVQ WFKSSCSILE GDNSLEELST SKVAKSFRIP LGAVGYYIVA KYTPMTPDGE CGEPVYVLSE RAVETLPPSL NFLSITGDNI
0901: EGGILTASYG YIGGHEGKSK YEWHYHKAEN DLPGALIPEA SGLLQYTITK EAIGKFISFQ CIPVRDDGIV GEPRSCMSQE RVRPGNPSTV SLHVVGALVE
1001: GTMLSAEKEY WGGEEGASVF RWFRTNSDGT PCEIKGATTS SYLLSVGDIG YFISVSYEPV RNDRARGPTA ISEIAGPIVA GHPNCQSLEF LGSMIEGQRL
1101: SFVASYTGGM KGNCYLEWVR VKNNGVKEIL SSDEFLDLSL DDVGESIELI YTPVREDGIE GSPRSIRTDG IAPANPMGLE LLIPDCCEKQ EVVPHKTYFG
1201: GHEGVGEYIW YRTKVKLHGS ALTEISYAGE EVVVCCRTLK YTPSLEDVGA YLVLYWIPTR VDGRSGKPVV VITNSPVAPA DPEVSNVRVK KLFSDAYSGE
1301: GEYFGGHEGP SLFSWYREND GTIDLIDGAN SKTYEVTESD YNCRILFGYT PVRSDSVVGE LKMSEPTEII LPEVPKVDML AFTGKAVQGD VLTAVQVIPK
1401: TEIQQLVWSK YKGDIQYQWF RSPESGDKIS YEALSSEISC SYKVRFEDIG RCLKCECVVH DVFGRSSELA YAETDPISPG FPRIEKLEIE GQGFHTNLYA
1501: VRGNYFGGKE GKSKIQWLRS MVGSPDLISI PGETGRMYEA NVDDVGYRLV VVYTPIREDG VQGHPVSAST EPVAVEPDIL KEVRQKLETG LVKFEVLCDK
1601: DPYPKKIVGE GNLERRMLEM NRKRIKVVKP GSKTSFATTE VRGSYGPPFH VETFRNDQRR LRIVVDSENE VDIVVQSRHL RDVIVLVIRG FAQRFNSTSL
1701: NSLLKIDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)