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AT2G34640.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : plastid transcriptionally active 12
Curator
Summary (TAIR10)
Present in transcriptionally active plastid chromosomes. Involved in plastid gene expression.
Computational
Description (TAIR10)
plastid transcriptionally active 12 (PTAC12); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: positive regulation of transcription, DNA-dependent, transcription from plastid promoter; LOCATED IN: plastid chromosome, chloroplast, nucleoid; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; Has 330 Blast hits to 283 proteins in 92 species: Archae - 0; Bacteria - 6; Metazoa - 99; Fungi - 32; Plants - 40; Viruses - 9; Other Eukaryotes - 144 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJKWeggNOG:ENOG4111FQIEMBL:AC004077EMBL:AK117813EMBL:CP002685EnsemblPlants:AT2G34640EnsemblPlants:AT2G34640.1
entrez:818029GeneID:818029Genevisible:F4IHY7GO:GO:0000427GO:GO:0005634GO:GO:0009295GO:GO:0009416
GO:GO:0009507GO:GO:0009508GO:GO:0009585GO:GO:0009637GO:GO:0010114GO:GO:0010218GO:GO:0042793
GO:GO:0045893GO:GO:0090228Gramene:AT2G34640.1hmmpanther:PTHR35720HOGENOM:HOG000071047InParanoid:F4IHY7IntAct:F4IHY7
KEGG:ath:AT2G34640MINT:MINT-8360687ncoils:CoilOMA:QTDREYRPaxDb:F4IHY7PIR:B84759PRIDE:F4IHY7
PRO:PR:F4IHY7Proteomes:UP000006548RefSeq:NP_181011.2STRING:3702.AT2G34640.1TAIR:AT2G34640tair10-symbols:HMRtair10-symbols:PTAC12
UniGene:At.37777UniProt:F4IHY7
Coordinates (TAIR10) chr2:-:14582061..14584345
Molecular Weight (calculated) 60898.40 Da
IEP (calculated) 4.69
GRAVY (calculated) -1.14
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISTTTWL YRGQVCTDSG KSSNCIVQRR VKCGFPLKTL HAGITSRDRS LRHCIKCKKE DGDGDVSEGS KKSEEGFEYV TVERHPYHSY MDSTSGKLEP
101: ASGARASIPG EDYWPEGTSS RVRAARAPQP AGESSSFPSY GKNPGSRRKK NRKATEENVT VETNDEVSDS EDSSEEEEND SSDGFVTYKN EFEREEEETG
201: FELDKKLGRP HPFIDPTKKK QIEKTLTSDE SWWNWRKPEK EQWSRWQRRR PDVETVFLKA MAETGQVKLY GEEPTLTETS LYRARRHLFK EERLQAERER
301: LAKEGPMAFY SEWVKAWKRD TSREAVQKHF EETGEDENTQ LIEMFSHQTD REYRIMMGTD IRIKRDPLAM RMREDQIKQI WGGDPVYPTI NYIQDPNAVM
401: DFRGPDFHEP TPNMLSYLKE NGKVISREMH EALLTKEKTE QLEVPDMDDA MAQAVDIGEN DDDEDDADVE KDDEKVPRNW SVLKETPELR TAKPKPKKEG
501: RMSLDEAVDD AENLTDFLMD FEEETDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)