suba logo
AT2G34630.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : geranyl diphosphate synthase 1
Curator
Summary (TAIR10)
Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.
Computational
Description (TAIR10)
geranyl diphosphate synthase 1 (GPS1); CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 15732 Blast hits to 15728 proteins in 2900 species: Archae - 335; Bacteria - 9322; Metazoa - 401; Fungi - 471; Plants - 404; Viruses - 0; Other Eukaryotes - 4799 (source: NCBI BLink).
Protein Annotations
EnsemblPlants:AT2G34630EnsemblPlants:AT2G34630.1entrez:818028gramene_pathway:2.5.1.1gramene_pathway:PWY-5122gramene_pathway:PWY-5123gramene_plant_reactome:1119545
gramene_plant_reactome:6874493hmmpanther:PTHR12001hmmpanther:PTHR12001:SF47Pfam:PF00348scanprosite:PS00444scanprosite:PS00723tair10-symbols:GPPS
tair10-symbols:GPS1
Coordinates (TAIR10) chr2:+:14579726..14581632
Molecular Weight (calculated) 35048.40 Da
IEP (calculated) 5.71
GRAVY (calculated) 0.05
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLAEVPKLA SAAEYFFKRG VQGKQFRSTI LLLMATALNV RVPEALIGES TDIVTSELRV RQRGIAEITE MIHVASLLHD DVLDDADTRR GVGSLNVVMG
101: NKMSVLAGDF LLSRACGALA ALKNTEVVAL LATAVEHLVT GETMEITSST EQRYSMDYYM QKTYYKTASL ISNSCKAVAV LTGQTAEVAV LAFEYGRNLG
201: LAFQLIDDIL DFTGTSASLG KGSLSDIRHG VITAPILFAM EEFPQLREVV DQVEKDPRNV DIALEYLGKS KGIQRARELA MEHANLAAAA IGSLPETDNE
301: DVKRSRRALI DLTHRVITRN K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)