AT2G34560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.980 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; INVOLVED IN: protein metabolic process; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G80350.1); Has 30441 Blast hits to 28189 proteins in 3119 species: Archae - 1481; Bacteria - 11200; Metazoa - 4743; Fungi - 3442; Plants - 2763; Viruses - 25; Other Eukaryotes - 6787 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14560266..14562695 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 42875.10 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.54 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.50 | ||||||||||||||||||||||||||||||||||||||||
| Length | 384 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATDEPSQTR WSFLFGRKKL PEEDVSNKDQ PEDGSSNGNN GDVNNNSSPV TNQDGNTALA NGNVIREKPK KSMFPPFESA ETRTLAESLS RDIIRGNPNI 101: KWESIKGLEN AKKLLKEAVV MPIKYPTYFN GLLTPWKGIL LFGPPGTGKT MLAKAVATEC NTTFFNISAS SVVSKWRGDS EKLIRVLFDL ARHHAPSTIF 201: LDEIDAIISQ RGGEGRSEHE ASRRLKTELL IQMDGLQKTN ELVFVLAATN LPWELDAAML RRLEKRILVP LPDPEARRGM FEMLIPSQPG DEPLPHDVLV 301: EKSEGYSGSD IRILCKEAAM QPLRRTLAIL EDREDVVPED ELPKIGPILP EDIDRALSNT RPSAHLHAHL YDKFNDDYGS QILK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)