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AT2G34510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.928
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF642
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: anchored to membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF642 (InterPro:IPR006946), Galactose-binding domain-like (InterPro:IPR008979); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF642 (TAIR:AT1G29980.1); Has 305 Blast hits to 265 proteins in 22 species: Archae - 0; Bacteria - 13; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKHFeggNOG:ENOG411248WEMBL:AC004077EMBL:AF325081EMBL:CP002685EnsemblPlants:AT2G34510EnsemblPlants:AT2G34510.1
entrez:818014Gene3D:2.60.120.260GeneID:818014GO:GO:0031225Gramene:AT2G34510.1hmmpanther:PTHR31265hmmpanther:PTHR31265:SF1
HOGENOM:HOG000231422InterPro:IPR006946InterPro:IPR008979KEGG:ath:AT2G34510OMA:MVETKANPfam:PF04862PhylomeDB:O64696
PIR:E84757Proteomes:UP000006548RefSeq:NP_180998.1STRING:3702.AT2G34510.1SUPFAM:SSF49785TAIR:AT2G34510UniGene:At.19519
UniProt:O64696
Coordinates (TAIR10) chr2:-:14544114..14546732
Molecular Weight (calculated) 43946.00 Da
IEP (calculated) 4.37
GRAVY (calculated) -0.09
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MMLYSNNSWR SNSILILLLG LSIVAAADSA GKTSPVEDGL VVNGDFETPP SNGFPDDAII EDTSEIPSWR SDGTVELIKS GQKQGGMILI VPEGRHAVRL
101: GNDAEISQEL TVEKGSIYSV TFSAARTCAQ LESLNVSVAS SDEPIASQTI DLQTVYSVQG WDPYAWAFEA VVDRVRLVFK NPGMEDDPTC GPIIDDIAVK
201: KLFTPDKPKG NAVINGDFEE GPWMFRNTTL GVLLPTNLDE EISSLPGWTV ESNRAVRFID SDHFSVPEGK RALELLSGKE GIISQMVETK ANIPYKMSFS
301: LGHAGDKCKE PLAVMAFAGD QAQNFHYMAQ ANSSFERSEL NFTAKAERTR IAFYSIYYNT RTDDMTSLCG PVIDDVKVWF SGSSRIGFSF PLFILLSLVF
401: I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)