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AT2G34450.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : HMG-box (high mobility group) DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HMG-box (high mobility group) DNA-binding family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910); BEST Arabidopsis thaliana protein match is: high mobility group B3 (TAIR:AT1G20696.1); Has 3501 Blast hits to 2767 proteins in 283 species: Archae - 0; Bacteria - 0; Metazoa - 2368; Fungi - 291; Plants - 519; Viruses - 3; Other Eukaryotes - 320 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5648eggNOG:KOG0381EMBL:AC004077EMBL:AC004481EMBL:AK118955EMBL:AY084626EMBL:BT005660
EMBL:CP002685EnsemblPlants:AT2G34450EnsemblPlants:AT2G34450.1entrez:818008Gene3D:1.10.30.10GeneID:818008Genevisible:O64702
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006355hmmpanther:PTHR13711hmmpanther:PTHR13711:SF200HOGENOM:HOG000197860
InParanoid:O64702InterPro:IPR009071KEGG:ath:AT2G34450OMA:YTKRMESPaxDb:O64702Pfam:O64702Pfam:PF00505
Pfscan:PS50118PhylomeDB:O64702PIR:T02332PRIDE:O64702PRO:PR:O64702PROSITE:PS50118ProteinModelPortal:O64702
Proteomes:UP000006548RefSeq:NP_001031480.1RefSeq:NP_565788.1SMART:SM00398SMR:O64702STRING:3702.AT2G34450.2SUPFAM:SSF47095
TAIR:AT2G34450UniGene:At.37803UniProt:O64702
Coordinates (TAIR10) chr2:-:14527918..14529448
Molecular Weight (calculated) 17499.80 Da
IEP (calculated) 10.15
GRAVY (calculated) -1.24
Length 151 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKRAPKSGP LSPSCSGGSS RNLELAVKSS EGARRSTRLR LQPLRKPKTS PKKKPVKLQT KMPKKPATAF FFFLDDFRKQ YQEENPDVKS MREIGKTCGE
101: KWKTMTYEEK VKYYDIATEK REEFHRAMTE YTKRMESGAH DESETDSDYS E
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)