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AT2G34420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : photosystem II light harvesting complex gene B1B2
Curator
Summary (TAIR10)
Photosystem II type I chlorophyll a/b-binding protein
Computational
Description (TAIR10)
photosystem II light harvesting complex gene B1B2 (LHB1B2); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting in photosystem II, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; EXPRESSED DURING: seed development stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2425 Blast hits to 2343 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2093; Viruses - 0; Other Eukaryotes - 328 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IU0XeggNOG:ENOG410ZHBUEMBL:AC004077EMBL:AC004481EMBL:AF372886EMBL:AF419548EMBL:AF419587
EMBL:AF428397EMBL:AK229627EMBL:AY039561EMBL:AY045806EMBL:AY065125EMBL:AY079101EMBL:AY079110
EMBL:AY081587EMBL:AY142513EMBL:CP002685EMBL:X64460EnsemblPlants:AT2G34420EnsemblPlants:AT2G34420.1entrez:818005
Gene3D:1.10.3460.10GeneID:818005GO:GO:0009416GO:GO:0009507GO:GO:0009522GO:GO:0009534GO:GO:0009535
GO:GO:0009579GO:GO:0009768GO:GO:0009941GO:GO:0010287GO:GO:0016020GO:GO:0016021GO:GO:0016168
GO:GO:0018298GO:GO:0031409GO:GO:0046872Gramene:AT2G34420.1hmmpanther:PTHR21649hmmpanther:PTHR21649:SF26HOGENOM:HOG000238032
IntAct:Q39141InterPro:IPR001344InterPro:IPR022796InterPro:IPR023329KEGG:ath:AT2G34420KO:K08912OMA:FTMRKTA
PANTHER:PTHR21649Pfam:PF00504PhylomeDB:Q39141PIR:S23546Proteomes:UP000006548RefSeq:NP_565786.1SMR:Q39141
STRING:3702.AT2G34420.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT2G34420tair10-symbols:LHB1B2tair10-symbols:LHCB1.5UniGene:At.10812
UniGene:At.23647UniGene:At.24064UniGene:At.24351UniGene:At.24888UniGene:At.27457UniGene:At.32199UniGene:At.66422
UniGene:At.71003UniGene:At.71384UniGene:At.71449UniGene:At.71528UniProt:Q39141
Coordinates (TAIR10) chr2:-:14522716..14523513
Molecular Weight (calculated) 28055.40 Da
IEP (calculated) 5.09
GRAVY (calculated) -0.01
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSTMALSS PAFAGKAVKP AASDVLGSGR VTMRKTVAKP KGPSGSPWYG SDRVKYLGPF SGEPPSYLTG EFPGDYGWDT AGLSADPETF ARNRELEVIH
101: SRWAMLGALG CVFPELLARN GVKFGEAVWF KAGSQIFSDG GLDYLGNPSL VHAQSILAIW ATQVILMGAV EGYRVAGDGP LGEAEDLLYP GGSFDPLGLA
201: TDPEAFAELK VKELKNGRLA MFSMFGFFVQ AIVTGKGPLE NLADHLADPV NNNAWAFATN FVPGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)