AT2G34400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR-like) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G08820.1); Has 41759 Blast hits to 14424 proteins in 280 species: Archae - 0; Bacteria - 19; Metazoa - 208; Fungi - 170; Plants - 40611; Viruses - 0; Other Eukaryotes - 751 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:+:14516226..14518186 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 70535.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.86 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 621 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLQMLIKPE KLAFSIYRQF PKFKPRQFEE ARRGDLERDF LFLLKKCISV NQLRQIQAQM LLHSVEKPNF LIPKAVELGD FNYSSFLFSV TEEPNHYSFN 101: YMIRGLTNTW NDHEAALSLY RRMKFSGLKP DKFTYNFVFI ACAKLEEIGV GRSVHSSLFK VGLERDVHIN HSLIMMYAKC GQVGYARKLF DEITERDTVS 201: WNSMISGYSE AGYAKDAMDL FRKMEEEGFE PDERTLVSML GACSHLGDLR TGRLLEEMAI TKKIGLSTFL GSKLISMYGK CGDLDSARRV FNQMIKKDRV 301: AWTAMITVYS QNGKSSEAFK LFFEMEKTGV SPDAGTLSTV LSACGSVGAL ELGKQIETHA SELSLQHNIY VATGLVDMYG KCGRVEEALR VFEAMPVKNE 401: ATWNAMITAY AHQGHAKEAL LLFDRMSVPP SDITFIGVLS ACVHAGLVHQ GCRYFHEMSS MFGLVPKIEH YTNIIDLLSR AGMLDEAWEF MERFPGKPDE 501: IMLAAILGAC HKRKDVAIRE KAMRMLMEMK EAKNAGNYVI SSNVLADMKM WDESAKMRAL MRDRGVVKTP GCSWIEIEGE LMEFLAGSDY LQCGREDSGS 601: LFDLLVEEMK RERYEFGYIH L |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)